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Microbial profiles at baseline and not the use of antibiotics determine the clinical outcome of the treatment of chronic periodontitis.

Bizzarro S, Laine ML, Buijs MJ, Brandt BW, Crielaard W, Loos BG, Zaura E.

Sci Rep. 2016 Feb 1;6:20205. doi: 10.1038/srep20205.


Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification.

Ziesemer KA, Mann AE, Sankaranarayanan K, Schroeder H, Ozga AT, Brandt BW, Zaura E, Waters-Rist A, Hoogland M, Salazar-García DC, Aldenderfer M, Speller C, Hendy J, Weston DA, MacDonald SJ, Thomas GH, Collins MJ, Lewis CM, Hofman C, Warinner C.

Sci Rep. 2015 Nov 13;5:16498. doi: 10.1038/srep16498.


Same Exposure but Two Radically Different Responses to Antibiotics: Resilience of the Salivary Microbiome versus Long-Term Microbial Shifts in Feces.

Zaura E, Brandt BW, Teixeira de Mattos MJ, Buijs MJ, Caspers MP, Rashid MU, Weintraub A, Nord CE, Savell A, Hu Y, Coates AR, Hubank M, Spratt DA, Wilson M, Keijser BJ, Crielaard W.

MBio. 2015 Nov 10;6(6):e01693-15. doi: 10.1128/mBio.01693-15.


The Oral Microbiome of Denture Wearers Is Influenced by Levels of Natural Dentition.

O'Donnell LE, Robertson D, Nile CJ, Cross LJ, Riggio M, Sherriff A, Bradshaw D, Lambert M, Malcolm J, Buijs MJ, Zaura E, Crielaard W, Brandt BW, Ramage G.

PLoS One. 2015 Sep 14;10(9):e0137717. doi: 10.1371/journal.pone.0137717. eCollection 2015.


metaModules identifies key functional subnetworks in microbiome-related disease.

May A, Brandt BW, El-Kebir M, Klau GW, Zaura E, Crielaard W, Heringa J, Abeln S.

Bioinformatics. 2015 Sep 5. pii: btv526. [Epub ahead of print]


The Effect of Fixed Orthodontic Appliances and Fluoride Mouthwash on the Oral Microbiome of Adolescents - A Randomized Controlled Clinical Trial.

Koopman JE, van der Kaaij NC, Buijs MJ, Elyassi Y, van der Veen MH, Crielaard W, Ten Cate JM, Zaura E.

PLoS One. 2015 Sep 2;10(9):e0137318. doi: 10.1371/journal.pone.0137318. eCollection 2015.


Editorial: the oral microbiome in an ecological perspective.

Zaura E, Mira A.

Front Cell Infect Microbiol. 2015 Apr 29;5:39. doi: 10.3389/fcimb.2015.00039. eCollection 2015. No abstract available.


Determining the Long-term Effect of Antibiotic Administration on the Human Normal Intestinal Microbiota Using Culture and Pyrosequencing Methods.

Rashid MU, Zaura E, Buijs MJ, Keijser BJ, Crielaard W, Nord CE, Weintraub A.

Clin Infect Dis. 2015 May 15;60 Suppl 2:S77-84. doi: 10.1093/cid/civ137.


Towards understanding oral health.

Zaura E, ten Cate JM.

Caries Res. 2015;49 Suppl 1:55-61. doi: 10.1159/000377733. Epub 2015 Apr 13.


Stability and resilience of oral microcosms toward acidification and Candida outgrowth by arginine supplementation.

Koopman JE, Röling WF, Buijs MJ, Sissons CH, ten Cate JM, Keijser BJ, Crielaard W, Zaura E.

Microb Ecol. 2015 Feb;69(2):422-33. doi: 10.1007/s00248-014-0535-x. Epub 2014 Nov 30.


The effect of propidium monoazide treatment on the measured bacterial composition of clinical samples after the use of a mouthwash.

Exterkate RA, Zaura E, Brandt BW, Buijs MJ, Koopman JE, Crielaard W, Ten Cate JM.

Clin Oral Investig. 2015 May;19(4):813-22. doi: 10.1007/s00784-014-1297-z. Epub 2014 Aug 10.


Effect of an oxygenating agent on oral bacteria in vitro and on dental plaque composition in healthy young adults.

Fernandez y Mostajo M, van der Reijden WA, Buijs MJ, Beertsen W, Van der Weijden F, Crielaard W, Zaura E.

Front Cell Infect Microbiol. 2014 Jul 23;4:95. doi: 10.3389/fcimb.2014.00095. eCollection 2014.


Historical and contemporary hypotheses on the development of oral diseases: are we there yet?

Rosier BT, De Jager M, Zaura E, Krom BP.

Front Cell Infect Microbiol. 2014 Jul 16;4:92. doi: 10.3389/fcimb.2014.00092. eCollection 2014. Review.


Acquiring and maintaining a normal oral microbiome: current perspective.

Zaura E, Nicu EA, Krom BP, Keijser BJ.

Front Cell Infect Microbiol. 2014 Jun 26;4:85. doi: 10.3389/fcimb.2014.00085. eCollection 2014. Review.


The anti-adhesive mode of action of a purified mushroom (Lentinus edodes) extract with anticaries and antigingivitis properties in two oral bacterial phatogens.

Signoretto C, Marchi A, Bertoncelli A, Burlacchini G, Papetti A, Pruzzo C, Zaura E, Lingström P, Ofek I, Pratten J, Spratt DA, Wilson M, Canepari P.

BMC Complement Altern Med. 2014 Feb 24;14:75. doi: 10.1186/1472-6882-14-75.


The effects of propidium monoazide treatment on the measured composition of polymicrobial biofilms after treatment with chlorhexidine.

Exterkate RA, Zaura E, Buijs MJ, Koopman J, Crielaard W, ten Cate JM.

Caries Res. 2014;48(4):291-8.


Systematic evaluation of bias in microbial community profiles induced by whole genome amplification.

Direito SO, Zaura E, Little M, Ehrenfreund P, Röling WF.

Environ Microbiol. 2014 Mar;16(3):643-57. doi: 10.1111/1462-2920.12365. Epub 2014 Jan 23.


Impacts of shallow geothermal energy production on redox processes and microbial communities.

Bonte M, Röling WF, Zaura E, van der Wielen PW, Stuyfzand PJ, van Breukelen BM.

Environ Sci Technol. 2013 Dec 17;47(24):14476-84. doi: 10.1021/es4030244. Epub 2013 Dec 4.


Sterile paper points as a bacterial DNA-contamination source in microbiome profiles of clinical samples.

van der Horst J, Buijs MJ, Laine ML, Wismeijer D, Loos BG, Crielaard W, Zaura E.

J Dent. 2013 Dec;41(12):1297-301. doi: 10.1016/j.jdent.2013.10.008. Epub 2013 Oct 14.


Effects of high-fluoride dentifrice (5,000-ppm) on caries-related plaque and salivary variables.

Mannaa A, Carlén A, Zaura E, Buijs MJ, Bukhary S, Lingström P.

Clin Oral Investig. 2014;18(5):1419-26. doi: 10.1007/s00784-013-1119-8. Epub 2013 Oct 8.

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