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Results: 1 to 20 of 43

1.

Facial pain with localized and widespread manifestations: separate pathways of vulnerability.

Slade GD, Smith SB, Zaykin DV, Tchivileva IE, Gibson DG, Yuryev A, Mazo I, Bair E, Fillingim R, Ohrbach R, Greenspan J, Maixner W, Diatchenko L.

Pain. 2013 Nov;154(11):2335-43. doi: 10.1016/j.pain.2013.07.009. Epub 2013 Jul 16.

PMID:
23867732
[PubMed - indexed for MEDLINE]
2.

Draft genome sequence of the rubber tree Hevea brasiliensis.

Rahman AY, Usharraj AO, Misra BB, Thottathil GP, Jayasekaran K, Feng Y, Hou S, Ong SY, Ng FL, Lee LS, Tan HS, Sakaff MK, Teh BS, Khoo BF, Badai SS, Aziz NA, Yuryev A, Knudsen B, Dionne-Laporte A, Mchunu NP, Yu Q, Langston BJ, Freitas TA, Young AG, Chen R, Wang L, Najimudin N, Saito JA, Alam M.

BMC Genomics. 2013 Feb 2;14:75. doi: 10.1186/1471-2164-14-75.

PMID:
23375136
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium.

Saw JH, Yuryev A, Kanbe M, Hou S, Young AG, Aizawa S, Alam M.

Stand Genomic Sci. 2012 Mar 19;6(1):84-93. doi: 10.4056/sigs.2445005. Epub 2012 Mar 5.

PMID:
22675601
[PubMed]
Free PMC Article
4.

Contextual data integration in drug discovery.

Yuryev A.

Expert Opin Drug Discov. 2012 Aug;7(8):659-66. doi: 10.1517/17460441.2012.691877. Epub 2012 Jun 4. Review.

PMID:
22657736
[PubMed - indexed for MEDLINE]
5.

Integrating fragmented software applications into holistic solutions: focus on drug discovery.

Yuryev A.

Expert Opin Drug Discov. 2011 Apr;6(4):383-92. doi: 10.1517/17460441.2011.557659. Epub 2011 Feb 25.

PMID:
22646016
[PubMed]
6.

Analysis and construction of pathogenicity island regulatory pathways in Salmonella enterica serovar Typhi.

Ong SY, Ng FL, Badai SS, Yuryev A, Alam M.

J Integr Bioinform. 2010 Sep 23;7(1). doi: 10.2390/biecoll-jib-2010-145.

PMID:
20861532
[PubMed - indexed for MEDLINE]
7.

Computational approaches for drug repositioning and combination therapy design.

Kotelnikova E, Yuryev A, Mazo I, Daraselia N.

J Bioinform Comput Biol. 2010 Jun;8(3):593-606.

PMID:
20556864
[PubMed - indexed for MEDLINE]
8.

Custom CGH array profiling of copy number variations (CNVs) on chromosome 6p21.32 (HLA locus) in patients with venous malformations associated with multiple sclerosis.

Ferlini A, Bovolenta M, Neri M, Gualandi F, Balboni A, Yuryev A, Salvi F, Gemmati D, Liboni A, Zamboni P.

BMC Med Genet. 2010 Apr 28;11:64. doi: 10.1186/1471-2350-11-64.

PMID:
20426824
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Atlas of signaling for interpretation of microarray experiments.

Kotelnikova E, Ivanikova N, Kalinin A, Yuryev A, Daraselia N.

PLoS One. 2010 Feb 17;5(2):e9256. doi: 10.1371/journal.pone.0009256.

PMID:
20174649
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Ariadne's ChemEffect and Pathway Studio knowledge base.

Yuryev A, Kotelnikova E, Daraselia N.

Expert Opin Drug Discov. 2009 Dec;4(12):1307-18. doi: 10.1517/17460440903413488.

PMID:
23480468
[PubMed]
11.

In silico pathway analysis: the final frontier towards completely rational drug design.

Yuryev A.

Expert Opin Drug Discov. 2008 Aug;3(8):867-76. doi: 10.1517/17460441.3.8.867.

PMID:
23484964
[PubMed]
12.

Finding mesoscopic communities in sparse networks.

Ispolatov I, Mazo I, Yuryev A.

J Stat Mech. 2006 Sep 1;9:p09014.

PMID:
18461156
[PubMed]
Free PMC Article
13.

Cliques and duplication-divergence network growth.

Ispolatov I, Krapivsky P, Mazo I, Yuryev A.

New J Phys. 2005 Jun 17;7:145.

PMID:
18239727
[PubMed]
Free PMC Article
14.

Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia.

Dunfield PF, Yuryev A, Senin P, Smirnova AV, Stott MB, Hou S, Ly B, Saw JH, Zhou Z, Ren Y, Wang J, Mountain BW, Crowe MA, Weatherby TM, Bodelier PL, Liesack W, Feng L, Wang L, Alam M.

Nature. 2007 Dec 6;450(7171):879-82. Epub 2007 Nov 14.

PMID:
18004300
[PubMed - indexed for MEDLINE]
15.

Developing a statistical model for primer design.

Huang J, Yuryev A.

Methods Mol Biol. 2007;402:105-38. Review.

PMID:
17951793
[PubMed - indexed for MEDLINE]
16.

PCR primer design using statistical modeling.

Yuryev A.

Methods Mol Biol. 2007;402:93-104. Review.

PMID:
17951792
[PubMed - indexed for MEDLINE]
17.

Molecular networks in microarray analysis.

Sivachenko AY, Yuryev A, Daraselia N, Mazo I.

J Bioinform Comput Biol. 2007 Apr;5(2B):429-56. Review.

PMID:
17636854
[PubMed - indexed for MEDLINE]
18.

Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

BMC Bioinformatics. 2007 Jul 10;8:243.

PMID:
17620146
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Pathway analysis for design of promiscuous drugs and selective drug mixtures.

Sivachenko A, Kalinin A, Yuryev A.

Curr Drug Discov Technol. 2006 Dec;3(4):269-77. Review.

PMID:
17430103
[PubMed - indexed for MEDLINE]
20.

Pathway analysis software as a tool for drug target selection, prioritization and validation of drug mechanism.

Sivachenko AY, Yuryev A.

Expert Opin Ther Targets. 2007 Mar;11(3):411-21. Review.

PMID:
17298298
[PubMed - indexed for MEDLINE]

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