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Results: 7

1.

Large-scale recoding of an arbovirus genome to rebalance its insect versus mammalian preference.

Shen SH, Stauft CB, Gorbatsevych O, Song Y, Ward CB, Yurovsky A, Mueller S, Futcher B, Wimmer E.

Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4749-54. doi: 10.1073/pnas.1502864112. Epub 2015 Mar 30.

2.

Tissue-specific effects of genetic and epigenetic variation on gene regulation and splicing.

Gutierrez-Arcelus M, Ongen H, Lappalainen T, Montgomery SB, Buil A, Yurovsky A, Bryois J, Padioleau I, Romano L, Planchon A, Falconnet E, Bielser D, Gagnebin M, Giger T, Borel C, Letourneau A, Makrythanasis P, Guipponi M, Gehrig C, Antonarakis SE, Dermitzakis ET.

PLoS Genet. 2015 Jan 29;11(1):e1004958. doi: 10.1371/journal.pgen.1004958. eCollection 2015 Jan.

3.

Measurement of average decoding rates of the 61 sense codons in vivo.

Gardin J, Yeasmin R, Yurovsky A, Cai Y, Skiena S, Futcher B.

Elife. 2014 Oct 27;3. doi: 10.7554/eLife.03735.

4.

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.

Waszak SM, Kilpinen H, Gschwind AR, Orioli A, Raghav SK, Witwicki RM, Migliavacca E, Yurovsky A, Lappalainen T, Hernandez N, Reymond A, Dermitzakis ET, Deplancke B.

Bioinformatics. 2014 Jan 15;30(2):165-71. doi: 10.1093/bioinformatics/btt667. Epub 2013 Nov 18.

5.

Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription.

Kilpinen H, Waszak SM, Gschwind AR, Raghav SK, Witwicki RM, Orioli A, Migliavacca E, Wiederkehr M, Gutierrez-Arcelus M, Panousis NI, Yurovsky A, Lappalainen T, Romano-Palumbo L, Planchon A, Bielser D, Bryois J, Padioleau I, Udin G, Thurnheer S, Hacker D, Core LJ, Lis JT, Hernandez N, Reymond A, Deplancke B, Dermitzakis ET.

Science. 2013 Nov 8;342(6159):744-7. doi: 10.1126/science.1242463. Epub 2013 Oct 17.

6.

Passive and active DNA methylation and the interplay with genetic variation in gene regulation.

Gutierrez-Arcelus M, Lappalainen T, Montgomery SB, Buil A, Ongen H, Yurovsky A, Bryois J, Giger T, Romano L, Planchon A, Falconnet E, Bielser D, Gagnebin M, Padioleau I, Borel C, Letourneau A, Makrythanasis P, Guipponi M, Gehrig C, Antonarakis SE, Dermitzakis ET.

Elife. 2013 Jun 4;2:e00523. doi: 10.7554/eLife.00523. Erratum in: Elife. 2013;2:e01045.

7.

FluReF, an automated flu virus reassortment finder based on phylogenetic trees.

Yurovsky A, Moret BM.

BMC Genomics. 2011;12 Suppl 2:S3. doi: 10.1186/1471-2164-12-S2-S3. Epub 2011 Jul 27.

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