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Synteny analysis in Rosids with a walnut physical map reveals slow genome evolution in long-lived woody perennials.

Luo MC, You FM, Li P, Wang JR, Zhu T, Dandekar AM, Leslie CA, Aradhya M, McGuire PE, Dvorak J.

BMC Genomics. 2015 Sep 17;16:707. doi: 10.1186/s12864-015-1906-5.


Disease Resistance Gene Analogs (RGAs) in Plants.

Sekhwal MK, Li P, Lam I, Wang X, Cloutier S, You FM.

Int J Mol Sci. 2015 Aug 14;16(8):19248-90. doi: 10.3390/ijms160819248. Review.


QTL for fatty acid composition and yield in linseed (Linum usitatissimum L.).

Kumar S, You FM, Duguid S, Booker H, Rowland G, Cloutier S.

Theor Appl Genet. 2015 May;128(5):965-84. doi: 10.1007/s00122-015-2483-3. Epub 2015 Mar 8.


Identification of candidate genes, regions and markers for pre-harvest sprouting resistance in wheat (Triticum aestivum L.).

Cabral AL, Jordan MC, McCartney CA, You FM, Humphreys DG, MacLachlan R, Pozniak CJ.

BMC Plant Biol. 2014 Nov 29;14:340. doi: 10.1186/s12870-014-0340-1.


Cassava genome from a wild ancestor to cultivated varieties.

Wang W, Feng B, Xiao J, Xia Z, Zhou X, Li P, Zhang W, Wang Y, Møller BL, Zhang P, Luo MC, Xiao G, Liu J, Yang J, Chen S, Rabinowicz PD, Chen X, Zhang HB, Ceballos H, Lou Q, Zou M, Carvalho LJ, Zeng C, Xia J, Sun S, Fu Y, Wang H, Lu C, Ruan M, Zhou S, Wu Z, Liu H, Kannangara RM, Jørgensen K, Neale RL, Bonde M, Heinz N, Zhu W, Wang S, Zhang Y, Pan K, Wen M, Ma PA, Li Z, Hu M, Liao W, Hu W, Zhang S, Pei J, Guo A, Guo J, Zhang J, Zhang Z, Ye J, Ou W, Ma Y, Liu X, Tallon LJ, Galens K, Ott S, Huang J, Xue J, An F, Yao Q, Lu X, Fregene M, López-Lavalle LA, Wu J, You FM, Chen M, Hu S, Wu G, Zhong S, Ling P, Chen Y, Wang Q, Liu G, Liu B, Li K, Peng M.

Nat Commun. 2014 Oct 10;5:5110. doi: 10.1038/ncomms6110.


Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.).

Varshney RK, Mir RR, Bhatia S, Thudi M, Hu Y, Azam S, Zhang Y, Jaganathan D, You FM, Gao J, Riera-Lizarazu O, Luo MC.

Funct Integr Genomics. 2014 Mar;14(1):59-73. doi: 10.1007/s10142-014-0363-6. Epub 2014 Mar 8.


SNP-revealed genetic diversity in wild emmer wheat correlates with ecological factors.

Ren J, Chen L, Sun D, You FM, Wang J, Peng Y, Nevo E, Beiles A, Sun D, Luo MC, Peng J.

BMC Evol Biol. 2013 Aug 13;13:169. doi: 10.1186/1471-2148-13-169.


Genetic variation of six desaturase genes in flax and their impact on fatty acid composition.

Thambugala D, Duguid S, Loewen E, Rowland G, Booker H, You FM, Cloutier S.

Theor Appl Genet. 2013 Oct;126(10):2627-41. doi: 10.1007/s00122-013-2161-2. Epub 2013 Aug 9.


Arguments for standardizing transposable element annotation in plant genomes.

Ragupathy R, You FM, Cloutier S.

Trends Plant Sci. 2013 Jul;18(7):367-76. doi: 10.1016/j.tplants.2013.03.005. Epub 2013 Apr 23. Review.


A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor.

Luo MC, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J, Chen S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie WR, Kianian SF, Martis MM, Mayer KF, Sehgal SK, Li W, Gill BS, Bevan MW, Simková H, Dolezel J, Weining S, Lazo GR, Anderson OD, Dvorak J.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7940-5. doi: 10.1073/pnas.1219082110. Epub 2013 Apr 22.


Genetic diversity revealed by single nucleotide polymorphism markers in a worldwide germplasm collection of durum wheat.

Ren J, Sun D, Chen L, You FM, Wang J, Peng Y, Nevo E, Sun D, Luo MC, Peng J.

Int J Mol Sci. 2013 Mar 28;14(4):7061-88. doi: 10.3390/ijms14047061.


Aegilops tauschii single nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat.

Wang J, Luo MC, Chen Z, You FM, Wei Y, Zheng Y, Dvorak J.

New Phytol. 2013 May;198(3):925-37. doi: 10.1111/nph.12164. Epub 2013 Feb 4.


Insular organization of gene space in grass genomes.

Gottlieb A, Müller HG, Massa AN, Wanjugi H, Deal KR, You FM, Xu X, Gu YQ, Luo MC, Anderson OD, Chan AP, Rabinowicz P, Devos KM, Dvorak J.

PLoS One. 2013;8(1):e54101. doi: 10.1371/journal.pone.0054101. Epub 2013 Jan 11.


Genome wide SNP discovery in flax through next generation sequencing of reduced representation libraries.

Kumar S, You FM, Cloutier S.

BMC Genomics. 2012 Dec 6;13:684. doi: 10.1186/1471-2164-13-684.


PIECE: a database for plant gene structure comparison and evolution.

Wang Y, You FM, Lazo GR, Luo MC, Thilmony R, Gordon S, Kianian SF, Gu YQ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1159-66. doi: 10.1093/nar/gks1109. Epub 2012 Nov 24.


Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.

You FM, Deal KR, Wang J, Britton MT, Fass JN, Lin D, Dandekar AM, Leslie CA, Aradhya M, Luo MC, Dvorak J.

BMC Genomics. 2012 Jul 31;13:354. doi: 10.1186/1471-2164-13-354.


The origin of spelt and free-threshing hexaploid wheat.

Dvorak J, Deal KR, Luo MC, You FM, von Borstel K, Dehghani H.

J Hered. 2012 May-Jun;103(3):426-41. doi: 10.1093/jhered/esr152. Epub 2012 Feb 29.


Characterizing the walnut genome through analyses of BAC end sequences.

Wu J, Gu YQ, Hu Y, You FM, Dandekar AM, Leslie CA, Aradhya M, Dvorak J, Luo MC.

Plant Mol Biol. 2012 Jan;78(1-2):95-107. doi: 10.1007/s11103-011-9849-y. Epub 2011 Nov 19.


A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes.

Palti Y, Genet C, Gao G, Hu Y, You FM, Boussaha M, Rexroad CE 3rd, Luo MC.

Mar Biotechnol (NY). 2012 Jun;14(3):343-57. doi: 10.1007/s10126-011-9418-z. Epub 2011 Nov 19.


Mapping and validation of quantitative trait loci associated with wheat yellow mosaic bymovirus resistance in bread wheat.

Zhu X, Wang H, Guo J, Wu Z, Cao A, Bie T, Nie M, You FM, Cheng Z, Xiao J, Liu Y, Cheng S, Chen P, Wang X.

Theor Appl Genet. 2012 Jan;124(1):177-88. doi: 10.1007/s00122-011-1696-3. Epub 2011 Sep 30.

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