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Results: 1 to 20 of 173

1.

Evolutionary dynamics of a polymorphic self-replicator population with a finite population size and hyper mutation rate.

Aita T, Yomo T.

J Theor Biol. 2015 Jul 21. pii: S0022-5193(15)00336-7. doi: 10.1016/j.jtbi.2015.07.007. [Epub ahead of print]

PMID:
26209021
2.

A design principle for a single-stranded RNA genome that replicates with less double-strand formation.

Usui K, Ichihashi N, Yomo T.

Nucleic Acids Res. 2015 Jul 21. pii: gkv742. [Epub ahead of print]

3.

Molecular Clock of Neutral Mutations in a Fitness-Increasing Evolutionary Process.

Kishimoto T, Ying BW, Tsuru S, Iijima L, Suzuki S, Hashimoto T, Oyake A, Kobayashi H, Someya Y, Narisawa D, Yomo T.

PLoS Genet. 2015 Jul 15;11(7):e1005392. doi: 10.1371/journal.pgen.1005392. eCollection 2015 Jul.

4.

Shape Transformations of Lipid Vesicles by Insertion of Bulky-Head Lipids.

Tsuda S, Sakakura T, Fujii S, Suzuki H, Yomo T.

PLoS One. 2015 Jul 15;10(7):e0132963. doi: 10.1371/journal.pone.0132963. eCollection 2015.

5.

Free-Energy-Based Design Policy for Robust Network Control against Environmental Fluctuation.

Iwai T, Kominami D, Murata M, Yomo T.

ScientificWorldJournal. 2015;2015:464031. doi: 10.1155/2015/464031. Epub 2015 Jun 8.

6.

Liposome-Based in Vitro Evolution of Aminoacyl-tRNA Synthetase for Enhanced Pyrrolysine Derivative Incorporation.

Uyeda A, Watanabe T, Kato Y, Watanabe H, Yomo T, Hohsaka T, Matsuura T.

Chembiochem. 2015 Jun 6. doi: 10.1002/cbic.201500174. [Epub ahead of print]

PMID:
26052693
7.

A transcription and translation-coupled DNA replication system using rolling-circle replication.

Sakatani Y, Ichihashi N, Kazuta Y, Yomo T.

Sci Rep. 2015 May 27;5:10404. doi: 10.1038/srep10404.

8.

Membrane Curvature Affects the Formation of α-Hemolysin Nanopores.

Fujii S, Matsuura T, Yomo T.

ACS Chem Biol. 2015 Jul 17;10(7):1694-701. doi: 10.1021/acschembio.5b00107. Epub 2015 Apr 22.

PMID:
25860290
9.

Development of a reporter peptide that catalytically produces a fluorescent signal through α-complementation.

Nishiyama K, Ichihashi N, Kazuta Y, Yomo T.

Protein Sci. 2015 May;24(5):599-603. doi: 10.1002/pro.2667. Epub 2015 Apr 2.

PMID:
25740628
10.

Simple identification of two causes of noise in an aptazyme system by monitoring cell-free transcription.

Ichihashi N, Kobori S, Yomo T.

Methods Enzymol. 2015;550:93-107. doi: 10.1016/bs.mie.2014.10.043. Epub 2015 Jan 5.

PMID:
25605382
11.

Global coordination in adaptation to gene rewiring.

Murakami Y, Matsumoto Y, Tsuru S, Ying BW, Yomo T.

Nucleic Acids Res. 2015 Jan;43(2):1304-16. doi: 10.1093/nar/gku1366. Epub 2015 Jan 6.

12.

Directed evolution of cell size in Escherichia coli.

Yoshida M, Tsuru S, Hirata N, Seno S, Matsuda H, Ying BW, Yomo T.

BMC Evol Biol. 2014 Dec 17;14:257. doi: 10.1186/s12862-014-0257-1.

13.

Nutrient-dependent growth defects and mutability of mutators in Escherichia coli.

Ishizawa Y, Ying BW, Tsuru S, Yomo T.

Genes Cells. 2015 Jan;20(1):68-76. doi: 10.1111/gtc.12199. Epub 2014 Nov 7.

PMID:
25378049
14.

Stochasticity in gene expression in a cell-sized compartment.

Nishimura K, Tsuru S, Suzuki H, Yomo T.

ACS Synth Biol. 2015 May 15;4(5):566-76. doi: 10.1021/sb500249g. Epub 2014 Oct 27.

PMID:
25280237
15.

The evolutionary enhancement of genotype-phenotype linkages in the presence of multiple copies of genetic material.

Uno K, Sunami T, Ichihashi N, Kazuta Y, Matsuura T, Yomo T.

Chembiochem. 2014 Oct 13;15(15):2281-8. doi: 10.1002/cbic.201402299. Epub 2014 Sep 9.

PMID:
25205221
16.

Contribution of silent mutations to thermal adaptation of RNA bacteriophage Qβ.

Kashiwagi A, Sugawara R, Sano Tsushima F, Kumagai T, Yomo T.

J Virol. 2014 Oct;88(19):11459-68. doi: 10.1128/JVI.01127-14. Epub 2014 Jul 23.

17.

Positive roles of compartmentalization in internal reactions.

Ichihashi N, Yomo T.

Curr Opin Chem Biol. 2014 Oct;22:12-7. doi: 10.1016/j.cbpa.2014.06.011. Epub 2014 Jul 15. Review.

PMID:
25032508
18.

Statistical analysis of vesicle morphology dynamics based on a free energy landscape.

Tsuda S, Suzuki H, Yomo T.

Soft Matter. 2014 Aug 28;10(32):6038-46. doi: 10.1039/c4sm00992d.

PMID:
24998870
19.

Liposome-based liquid handling platform featuring addition, mixing, and aliquoting of femtoliter volumes.

Shiomi H, Tsuda S, Suzuki H, Yomo T.

PLoS One. 2014 Jul 3;9(7):e101820. doi: 10.1371/journal.pone.0101820. eCollection 2014.

20.

Adaptive evolution of an artificial RNA genome to a reduced ribosome environment.

Mizuuchi R, Ichihashi N, Usui K, Kazuta Y, Yomo T.

ACS Synth Biol. 2015 Mar 20;4(3):292-8. doi: 10.1021/sb5000884. Epub 2014 Jun 24.

PMID:
24933578
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