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Results: 1 to 20 of 165

1.

Development of a reporter peptide that catalytically produces a fluorescent signal through α-complementation.

Nishiyama K, Ichihashi N, Kazuta Y, Yomo T.

Protein Sci. 2015 Mar 4. doi: 10.1002/pro.2667. [Epub ahead of print]

PMID:
25740628
2.

Simple identification of two causes of noise in an aptazyme system by monitoring cell-free transcription.

Ichihashi N, Kobori S, Yomo T.

Methods Enzymol. 2015;550:93-107. doi: 10.1016/bs.mie.2014.10.043. Epub 2015 Jan 5.

PMID:
25605382
3.

Global coordination in adaptation to gene rewiring.

Murakami Y, Matsumoto Y, Tsuru S, Ying BW, Yomo T.

Nucleic Acids Res. 2015 Jan;43(2):1304-16. doi: 10.1093/nar/gku1366. Epub 2015 Jan 6.

4.

Directed evolution of cell size in Escherichia coli.

Yoshida M, Tsuru S, Hirata N, Seno S, Matsuda H, Ying BW, Yomo T.

BMC Evol Biol. 2014 Dec 17;14(1):257. [Epub ahead of print]

5.

Nutrient-dependent growth defects and mutability of mutators in Escherichia coli.

Ishizawa Y, Ying BW, Tsuru S, Yomo T.

Genes Cells. 2015 Jan;20(1):68-76. doi: 10.1111/gtc.12199. Epub 2014 Nov 7.

PMID:
25378049
6.

Stochasticity in Gene Expression in a Cell-Sized Compartment.

Nishimura K, Tsuru S, Suzuki H, Yomo T.

ACS Synth Biol. 2014 Oct 27. [Epub ahead of print]

PMID:
25280237
7.

The evolutionary enhancement of genotype-phenotype linkages in the presence of multiple copies of genetic material.

Uno K, Sunami T, Ichihashi N, Kazuta Y, Matsuura T, Yomo T.

Chembiochem. 2014 Oct 13;15(15):2281-8. doi: 10.1002/cbic.201402299. Epub 2014 Sep 9.

PMID:
25205221
8.

Contribution of silent mutations to thermal adaptation of RNA bacteriophage Qβ.

Kashiwagi A, Sugawara R, Sano Tsushima F, Kumagai T, Yomo T.

J Virol. 2014 Oct;88(19):11459-68. doi: 10.1128/JVI.01127-14. Epub 2014 Jul 23.

PMID:
25056887
9.

Positive roles of compartmentalization in internal reactions.

Ichihashi N, Yomo T.

Curr Opin Chem Biol. 2014 Oct;22:12-7. doi: 10.1016/j.cbpa.2014.06.011. Epub 2014 Jul 15. Review.

PMID:
25032508
10.

Statistical analysis of vesicle morphology dynamics based on a free energy landscape.

Tsuda S, Suzuki H, Yomo T.

Soft Matter. 2014 Aug 28;10(32):6038-46. doi: 10.1039/c4sm00992d.

PMID:
24998870
11.

Liposome-based liquid handling platform featuring addition, mixing, and aliquoting of femtoliter volumes.

Shiomi H, Tsuda S, Suzuki H, Yomo T.

PLoS One. 2014 Jul 3;9(7):e101820. doi: 10.1371/journal.pone.0101820. eCollection 2014.

12.

Adaptive evolution of an artificial RNA genome to a reduced ribosome environment.

Mizuuchi R, Ichihashi N, Usui K, Kazuta Y, Yomo T.

ACS Synth Biol. 2015 Mar 20;4(3):292-8. doi: 10.1021/sb5000884. Epub 2014 Jun 24.

PMID:
24933578
13.

Liposome display for in vitro selection and evolution of membrane proteins.

Fujii S, Matsuura T, Sunami T, Nishikawa T, Kazuta Y, Yomo T.

Nat Protoc. 2014 Jul;9(7):1578-91. doi: 10.1038/nprot.2014.107. Epub 2014 Jun 5.

PMID:
24901741
14.

Synthesis of milligram quantities of proteins using a reconstituted in vitro protein synthesis system.

Kazuta Y, Matsuura T, Ichihashi N, Yomo T.

J Biosci Bioeng. 2014 Nov;118(5):554-7. doi: 10.1016/j.jbiosc.2014.04.019. Epub 2014 May 28.

PMID:
24880499
15.

Adaptation of a cyanobacterium to a biochemically rich environment in experimental evolution as an initial step toward a chloroplast-like state.

Hosoda K, Habuchi M, Suzuki S, Miyazaki M, Takikawa G, Sakurai T, Kashiwagi A, Sueyoshi M, Matsumoto Y, Kiuchi A, Mori K, Yomo T.

PLoS One. 2014 May 29;9(5):e98337. doi: 10.1371/journal.pone.0098337. eCollection 2014.

16.

Transcriptome analysis of a microbial coculture in which the cell populations are separated by a membrane.

Hosoda K, Ono N, Suzuki S, Yomo T.

Methods Mol Biol. 2014;1151:151-64. doi: 10.1007/978-1-4939-0554-6_11.

PMID:
24838885
17.

A reduced genome decreases the host carrying capacity for foreign DNA.

Akeno Y, Ying BW, Tsuru S, Yomo T.

Microb Cell Fact. 2014 Apr 1;13(1):49. doi: 10.1186/1475-2859-13-49.

18.

Gene expression scaled by distance to the genome replication site.

Ying BW, Tsuru S, Seno S, Matsuda H, Yomo T.

Mol Biosyst. 2014 Mar 4;10(3):375-9. doi: 10.1039/c3mb70254e. Epub 2013 Dec 12.

PMID:
24336896
19.

In vitro membrane protein synthesis inside cell-sized vesicles reveals the dependence of membrane protein integration on vesicle volume.

Soga H, Fujii S, Yomo T, Kato Y, Watanabe H, Matsuura T.

ACS Synth Biol. 2014 Jun 20;3(6):372-9. doi: 10.1021/sb400094c. Epub 2013 Dec 11.

PMID:
24328098
20.

Defined DNA-mediated assemblies of gene-expressing giant unilamellar vesicles.

Hadorn M, Boenzli E, Sørensen KT, De Lucrezia D, Hanczyc MM, Yomo T.

Langmuir. 2013 Dec 10;29(49):15309-19. doi: 10.1021/la402621r. Epub 2013 Dec 2.

PMID:
24294899
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