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Items: 1 to 20 of 187

1.

Inference of fitness values and putative appearance time points for evolvable self-replicating molecules from time series of occurrence frequencies in an evolution reactor.

Aita T, Ichihashi N, Yomo T.

J Theor Biol. 2016 Jul 21;401:38-42. doi: 10.1016/j.jtbi.2016.04.014. Epub 2016 Apr 16.

PMID:
27091052
2.

Adaptation and diversification of an RNA replication system under initiation- or termination-impaired translational conditions.

Mizuuchi R, Yomo T, Ichihashi N.

Chembiochem. 2016 Apr 1. doi: 10.1002/cbic.201600100. [Epub ahead of print]

PMID:
27038303
3.

Effect of Liposome Size on Internal RNA Replication Coupled with Replicase Translation.

Sunami T, Ichihashi N, Nishikawa T, Kazuta Y, Yomo T.

Chembiochem. 2016 Apr 1. doi: 10.1002/cbic.201500662. [Epub ahead of print]

PMID:
27037959
4.

Host-parasite oscillation dynamics and evolution in a compartmentalized RNA replication system.

Bansho Y, Furubayashi T, Ichihashi N, Yomo T.

Proc Natl Acad Sci U S A. 2016 Mar 28. pii: 201524404. [Epub ahead of print]

PMID:
27035976
5.

The Escherichia coli transcriptome linked to growth fitness.

Ying BW, Yama K, Kitahara K, Yomo T.

Genom Data. 2015 Nov 10;7:1-3. doi: 10.1016/j.gdata.2015.11.011. eCollection 2016 Mar.

6.

Packet Fragmentation and Reassembly in Molecular Communication.

Furubayashi T, Nakano T, Eckford A, Okaie Y, Yomo T.

IEEE Trans Nanobioscience. 2016 Feb 12. [Epub ahead of print]

PMID:
26890919
7.

Sustainable proliferation of liposomes compatible with inner RNA replication.

Tsuji G, Fujii S, Sunami T, Yomo T.

Proc Natl Acad Sci U S A. 2016 Jan 19;113(3):590-5. doi: 10.1073/pnas.1516893113. Epub 2015 Dec 28.

PMID:
26711996
8.

Bacterial transcriptome reorganization in thermal adaptive evolution.

Ying BW, Matsumoto Y, Kitahara K, Suzuki S, Ono N, Furusawa C, Kishimoto T, Yomo T.

BMC Genomics. 2015 Oct 16;16(1):802. doi: 10.1186/s12864-015-1999-x.

9.

Replication of partial double-stranded RNAs by Qβ replicase.

Tomita K, Ichihashi N, Yomo T.

Biochem Biophys Res Commun. 2015 Nov 13;467(2):293-6. doi: 10.1016/j.bbrc.2015.09.169. Epub 2015 Oct 12.

10.

Genomic confirmation of nutrient-dependent mutability of mutators in Escherichia coli.

Tsuru S, Ishizawa Y, Shibai A, Takahashi Y, Motooka D, Nakamura S, Yomo T.

Genes Cells. 2015 Dec;20(12):972-81. doi: 10.1111/gtc.12300. Epub 2015 Sep 28.

PMID:
26414389
11.

Functional specialization in regulation and quality control in thermal adaptive evolution.

Yama K, Matsumoto Y, Murakami Y, Seno S, Matsuda H, Gotoh K, Motooka D, Nakamura S, Ying BW, Yomo T.

Genes Cells. 2015 Nov;20(11):943-55. doi: 10.1111/gtc.12298. Epub 2015 Sep 15.

12.

Periodic Pattern of Genetic and Fitness Diversity during Evolution of an Artificial Cell-Like System.

Ichihashi N, Aita T, Motooka D, Nakamura S, Yomo T.

Mol Biol Evol. 2015 Dec;32(12):3205-14. doi: 10.1093/molbev/msv189. Epub 2015 Sep 4.

PMID:
26342111
13.

Phenotypic convergence in bacterial adaptive evolution to ethanol stress.

Horinouchi T, Suzuki S, Hirasawa T, Ono N, Yomo T, Shimizu H, Furusawa C.

BMC Evol Biol. 2015 Sep 3;15:180. doi: 10.1186/s12862-015-0454-6.

14.

Evolutionary Consequence of a Trade-Off between Growth and Maintenance along with Ribosomal Damages.

Ying BW, Honda T, Tsuru S, Seno S, Matsuda H, Kazuta Y, Yomo T.

PLoS One. 2015 Aug 20;10(8):e0135639. doi: 10.1371/journal.pone.0135639. eCollection 2015.

15.

Evolutionary dynamics of a polymorphic self-replicator population with a finite population size and hyper mutation rate.

Aita T, Yomo T.

J Theor Biol. 2015 Oct 7;382:298-308. doi: 10.1016/j.jtbi.2015.07.007. Epub 2015 Jul 21.

PMID:
26209021
16.

A design principle for a single-stranded RNA genome that replicates with less double-strand formation.

Usui K, Ichihashi N, Yomo T.

Nucleic Acids Res. 2015 Sep 18;43(16):8033-43. doi: 10.1093/nar/gkv742. Epub 2015 Jul 21.

17.

Molecular Clock of Neutral Mutations in a Fitness-Increasing Evolutionary Process.

Kishimoto T, Ying BW, Tsuru S, Iijima L, Suzuki S, Hashimoto T, Oyake A, Kobayashi H, Someya Y, Narisawa D, Yomo T.

PLoS Genet. 2015 Jul 15;11(7):e1005392. doi: 10.1371/journal.pgen.1005392. eCollection 2015 Jul.

18.

Shape Transformations of Lipid Vesicles by Insertion of Bulky-Head Lipids.

Tsuda S, Sakakura T, Fujii S, Suzuki H, Yomo T.

PLoS One. 2015 Jul 15;10(7):e0132963. doi: 10.1371/journal.pone.0132963. eCollection 2015.

19.

Free-Energy-Based Design Policy for Robust Network Control against Environmental Fluctuation.

Iwai T, Kominami D, Murata M, Yomo T.

ScientificWorldJournal. 2015;2015:464031. doi: 10.1155/2015/464031. Epub 2015 Jun 8.

20.

Liposome-Based in Vitro Evolution of Aminoacyl-tRNA Synthetase for Enhanced Pyrrolysine Derivative Incorporation.

Uyeda A, Watanabe T, Kato Y, Watanabe H, Yomo T, Hohsaka T, Matsuura T.

Chembiochem. 2015 Aug 17;16(12):1797-802. doi: 10.1002/cbic.201500174. Epub 2015 Jul 2.

PMID:
26052693
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