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Results: 1 to 20 of 30

1.

Cell-based multi-parametric model of cleft progression during submandibular salivary gland branching morphogenesis.

Ray S, Yuan D, Dhulekar N, Oztan B, Yener B, Larsen M.

PLoS Comput Biol. 2013;9(11):e1003319. doi: 10.1371/journal.pcbi.1003319. Epub 2013 Nov 21.

PMID:
24277996
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Inferred spoligoforest topology unravels spatially bimodal distribution of mutations in the DR region.

Ozcaglar C, Shabbeer A, Kurepina N, Rastogi N, Yener B, Bennett KP.

IEEE Trans Nanobioscience. 2012 Sep;11(3):191-202. doi: 10.1109/TNB.2012.2213265.

PMID:
22987125
[PubMed - indexed for MEDLINE]
3.

Novel image analysis approach quantifies morphological characteristics of 3D breast culture acini with varying metastatic potentials.

McKeen Polizzotti L, Oztan B, Bjornsson CS, Shubert KR, Yener B, Plopper GE.

J Biomed Biotechnol. 2012;2012:102036. doi: 10.1155/2012/102036. Epub 2012 May 15.

PMID:
22665978
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Coupled analysis of in vitro and histology tissue samples to quantify structure-function relationship.

Acar E, Plopper GE, Yener B.

PLoS One. 2012;7(3):e32227. doi: 10.1371/journal.pone.0032227. Epub 2012 Mar 30.

PMID:
22479315
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

TB-Lineage: an online tool for classification and analysis of strains of Mycobacterium tuberculosis complex.

Shabbeer A, Cowan LS, Ozcaglar C, Rastogi N, Vandenberg SL, Yener B, Bennett KP.

Infect Genet Evol. 2012 Jun;12(4):789-97. doi: 10.1016/j.meegid.2012.02.010. Epub 2012 Mar 3.

PMID:
22406225
[PubMed - indexed for MEDLINE]
6.

Multiscale feature analysis of salivary gland branching morphogenesis.

Bilgin CC, Ray S, Baydil B, Daley WP, Larsen M, Yener B.

PLoS One. 2012;7(3):e32906. doi: 10.1371/journal.pone.0032906. Epub 2012 Mar 5.

PMID:
22403724
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Epidemiological models of Mycobacterium tuberculosis complex infections.

Ozcaglar C, Shabbeer A, Vandenberg SL, Yener B, Bennett KP.

Math Biosci. 2012 Apr;236(2):77-96. doi: 10.1016/j.mbs.2012.02.003. Epub 2012 Mar 1. Review.

PMID:
22387570
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Data-driven insights into deletions of Mycobacterium tuberculosis complex chromosomal DR region using spoligoforests.

Ozcaglar C, Shabbeer A, Kurepina N, Yener B, Bennett KP.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2011:75-82.

PMID:
22343484
[PubMed]
Free PMC Article
9.

The regulation of focal adhesion complex formation and salivary gland epithelial cell organization by nanofibrous PLGA scaffolds.

Sequeira SJ, Soscia DA, Oztan B, Mosier AP, Jean-Gilles R, Gadre A, Cady NC, Yener B, Castracane J, Larsen M.

Biomaterials. 2012 Apr;33(11):3175-86. doi: 10.1016/j.biomaterials.2012.01.010. Epub 2012 Jan 27.

PMID:
22285464
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Sublineage structure analysis of Mycobacterium tuberculosis complex strains using multiple-biomarker tensors.

Ozcaglar C, Shabbeer A, Vandenberg S, Yener B, Bennett KP.

BMC Genomics. 2011;12 Suppl 2:S1. doi: 10.1186/1471-2164-12-S2-S1. Epub 2011 Jul 27.

PMID:
21988942
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Web tools for molecular epidemiology of tuberculosis.

Shabbeer A, Ozcaglar C, Yener B, Bennett KP.

Infect Genet Evol. 2012 Jun;12(4):767-81. doi: 10.1016/j.meegid.2011.08.019. Epub 2011 Aug 28.

PMID:
21903179
[PubMed - indexed for MEDLINE]
12.

Quantitative metric profiles capture three-dimensional temporospatial architecture to discriminate cellular functional states.

McKeen-Polizzotti L, Henderson KM, Oztan B, Bilgin CC, Yener B, Plopper GE.

BMC Med Imaging. 2011 May 20;11:11. doi: 10.1186/1471-2342-11-11.

PMID:
21599975
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Quantification of three-dimensional cell-mediated collagen remodeling using graph theory.

Bilgin CC, Lund AW, Can A, Plopper GE, Yener B.

PLoS One. 2010 Sep 30;5(9). pii: e12783. doi: 10.1371/journal.pone.0012783.

PMID:
20927339
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

ECM-Aware Cell-Graph Mining for Bone Tissue Modeling and Classification.

Bilgin CC, Bullough P, Plopper GE, Yener B.

Data Min Knowl Discov. 2009 Oct 21;20(3):416-438.

PMID:
20543911
[PubMed]
Free PMC Article
15.

Examining the sublineage structure of Mycobacterium tuberculosis complex strains with multiple-biomarker tensors.

Ozcaglar C, Shabbeer A, Vandenberg S, Yener B, Bennett KP.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2010:543-548.

PMID:
22466374
[PubMed]
Free PMC Article
16.

Quantification of spatial parameters in 3D cellular constructs using graph theory.

Lund AW, Bilgin CC, Hasan MA, McKeen LM, Stegemann JP, Yener B, Zaki MJ, Plopper GE.

J Biomed Biotechnol. 2009;2009:928286. doi: 10.1155/2009/928286. Epub 2009 Nov 10.

PMID:
19920859
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Aflatoxin exposure in viral hepatitis patients in Turkey.

Mizrak D, Engin B, Onder FO, Yener B, Bektaş M, Biyikli Z, Idilman R, Cinar K, Karayalçin K, Ersöz S, Karayalçin S, Ozden A, Yurdaydin C, Yazihan N, Ataoğlu H, Bozkaya H, Uzunalimoğlu O.

Turk J Gastroenterol. 2009 Sep;20(3):192-7.

PMID:
19821201
[PubMed - indexed for MEDLINE]
18.

The natural and engineered 3D microenvironment as a regulatory cue during stem cell fate determination.

Lund AW, Yener B, Stegemann JP, Plopper GE.

Tissue Eng Part B Rev. 2009 Sep;15(3):371-80. doi: 10.1089/ten.TEB.2009.0270. Review.

PMID:
19505193
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The effect of K-ATP channel blockage during erythropoietin treatment in renal ischemia-reperfusion injury.

Yazihan N, Ataoglu H, Kavas GO, Akyurek N, Yener B, Aydm C.

J Invest Surg. 2008 Nov-Dec;21(6):340-7. doi: 10.1080/08941930802438906.

PMID:
19160144
[PubMed - indexed for MEDLINE]
20.

Histopathological image analysis: a review.

Gurcan MN, Boucheron LE, Can A, Madabhushi A, Rajpoot NM, Yener B.

IEEE Rev Biomed Eng. 2009;2:147-71. doi: 10.1109/RBME.2009.2034865. Epub 2009 Oct 30. Review.

PMID:
20671804
[PubMed - indexed for MEDLINE]
Free PMC Article

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