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Results: 1 to 20 of 31

1.

Lung necrosis and neutrophils reflect common pathways of susceptibility to Mycobacterium tuberculosis in genetically diverse, immune competent mice.

Niazi MK, Dhulekar N, Schmidt D, Major S, Cooper R, Abeijon C, Gatti D, Kramnik I, Yener B, Gurcan M, Beamer G.

Dis Model Mech. 2015 Jul 23. pii: dmm.020867. [Epub ahead of print]

2.

Cell-based multi-parametric model of cleft progression during submandibular salivary gland branching morphogenesis.

Ray S, Yuan D, Dhulekar N, Oztan B, Yener B, Larsen M.

PLoS Comput Biol. 2013;9(11):e1003319. doi: 10.1371/journal.pcbi.1003319. Epub 2013 Nov 21.

3.

Inferred spoligoforest topology unravels spatially bimodal distribution of mutations in the DR region.

Ozcaglar C, Shabbeer A, Kurepina N, Rastogi N, Yener B, Bennett KP.

IEEE Trans Nanobioscience. 2012 Sep;11(3):191-202. doi: 10.1109/TNB.2012.2213265.

PMID:
22987125
4.

Novel image analysis approach quantifies morphological characteristics of 3D breast culture acini with varying metastatic potentials.

McKeen Polizzotti L, Oztan B, Bjornsson CS, Shubert KR, Yener B, Plopper GE.

J Biomed Biotechnol. 2012;2012:102036. doi: 10.1155/2012/102036. Epub 2012 May 15.

5.

Coupled analysis of in vitro and histology tissue samples to quantify structure-function relationship.

Acar E, Plopper GE, Yener B.

PLoS One. 2012;7(3):e32227. doi: 10.1371/journal.pone.0032227. Epub 2012 Mar 30.

6.

TB-Lineage: an online tool for classification and analysis of strains of Mycobacterium tuberculosis complex.

Shabbeer A, Cowan LS, Ozcaglar C, Rastogi N, Vandenberg SL, Yener B, Bennett KP.

Infect Genet Evol. 2012 Jun;12(4):789-97. doi: 10.1016/j.meegid.2012.02.010. Epub 2012 Mar 3.

PMID:
22406225
7.

Multiscale feature analysis of salivary gland branching morphogenesis.

Bilgin CC, Ray S, Baydil B, Daley WP, Larsen M, Yener B.

PLoS One. 2012;7(3):e32906. doi: 10.1371/journal.pone.0032906. Epub 2012 Mar 5.

8.

Epidemiological models of Mycobacterium tuberculosis complex infections.

Ozcaglar C, Shabbeer A, Vandenberg SL, Yener B, Bennett KP.

Math Biosci. 2012 Apr;236(2):77-96. doi: 10.1016/j.mbs.2012.02.003. Epub 2012 Mar 1. Review.

9.

Data-driven insights into deletions of Mycobacterium tuberculosis complex chromosomal DR region using spoligoforests.

Ozcaglar C, Shabbeer A, Kurepina N, Yener B, Bennett KP.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2011:75-82.

10.

The regulation of focal adhesion complex formation and salivary gland epithelial cell organization by nanofibrous PLGA scaffolds.

Sequeira SJ, Soscia DA, Oztan B, Mosier AP, Jean-Gilles R, Gadre A, Cady NC, Yener B, Castracane J, Larsen M.

Biomaterials. 2012 Apr;33(11):3175-86. doi: 10.1016/j.biomaterials.2012.01.010. Epub 2012 Jan 27.

11.

Sublineage structure analysis of Mycobacterium tuberculosis complex strains using multiple-biomarker tensors.

Ozcaglar C, Shabbeer A, Vandenberg S, Yener B, Bennett KP.

BMC Genomics. 2011;12 Suppl 2:S1. doi: 10.1186/1471-2164-12-S2-S1. Epub 2011 Jul 27.

12.

Web tools for molecular epidemiology of tuberculosis.

Shabbeer A, Ozcaglar C, Yener B, Bennett KP.

Infect Genet Evol. 2012 Jun;12(4):767-81. doi: 10.1016/j.meegid.2011.08.019. Epub 2011 Aug 28.

PMID:
21903179
13.

Quantitative metric profiles capture three-dimensional temporospatial architecture to discriminate cellular functional states.

McKeen-Polizzotti L, Henderson KM, Oztan B, Bilgin CC, Yener B, Plopper GE.

BMC Med Imaging. 2011 May 20;11:11. doi: 10.1186/1471-2342-11-11.

14.

Quantification of three-dimensional cell-mediated collagen remodeling using graph theory.

Bilgin CC, Lund AW, Can A, Plopper GE, Yener B.

PLoS One. 2010 Sep 30;5(9). pii: e12783. doi: 10.1371/journal.pone.0012783.

15.

ECM-Aware Cell-Graph Mining for Bone Tissue Modeling and Classification.

Bilgin CC, Bullough P, Plopper GE, Yener B.

Data Min Knowl Discov. 2009 Oct 21;20(3):416-438.

16.

Examining the sublineage structure of Mycobacterium tuberculosis complex strains with multiple-biomarker tensors.

Ozcaglar C, Shabbeer A, Vandenberg S, Yener B, Bennett KP.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2010:543-548.

17.

Quantification of spatial parameters in 3D cellular constructs using graph theory.

Lund AW, Bilgin CC, Hasan MA, McKeen LM, Stegemann JP, Yener B, Zaki MJ, Plopper GE.

J Biomed Biotechnol. 2009;2009:928286. doi: 10.1155/2009/928286. Epub 2009 Nov 10.

18.

Aflatoxin exposure in viral hepatitis patients in Turkey.

Mizrak D, Engin B, Onder FO, Yener B, Bektaş M, Biyikli Z, Idilman R, Cinar K, Karayalçin K, Ersöz S, Karayalçin S, Ozden A, Yurdaydin C, Yazihan N, Ataoğlu H, Bozkaya H, Uzunalimoğlu O.

Turk J Gastroenterol. 2009 Sep;20(3):192-7.

PMID:
19821201
19.

The natural and engineered 3D microenvironment as a regulatory cue during stem cell fate determination.

Lund AW, Yener B, Stegemann JP, Plopper GE.

Tissue Eng Part B Rev. 2009 Sep;15(3):371-80. doi: 10.1089/ten.TEB.2009.0270. Review.

20.

The effect of K-ATP channel blockage during erythropoietin treatment in renal ischemia-reperfusion injury.

Yazihan N, Ataoglu H, Kavas GO, Akyurek N, Yener B, Aydm C.

J Invest Surg. 2008 Nov-Dec;21(6):340-7. doi: 10.1080/08941930802438906.

PMID:
19160144
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