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Results: 14

1.

Histone-Fold Domain Protein NF-Y Promotes Chromatin Accessibility for Cell Type-Specific Master Transcription Factors.

Oldfield AJ, Yang P, Conway AE, Cinghu S, Freudenberg JM, Yellaboina S, Jothi R.

Mol Cell. 2014 Sep 4;55(5):708-22. doi: 10.1016/j.molcel.2014.07.005. Epub 2014 Aug 14.

PMID:
25132174
[PubMed - in process]
2.

Integrative framework for identification of key cell identity genes uncovers determinants of ES cell identity and homeostasis.

Cinghu S, Yellaboina S, Freudenberg JM, Ghosh S, Zheng X, Oldfield AJ, Lackford BL, Zaykin DV, Hu G, Jothi R.

Proc Natl Acad Sci U S A. 2014 Apr 22;111(16):E1581-90. doi: 10.1073/pnas.1318598111. Epub 2014 Apr 7.

PMID:
24711389
[PubMed - indexed for MEDLINE]
3.

Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity.

Freudenberg JM, Ghosh S, Lackford BL, Yellaboina S, Zheng X, Li R, Cuddapah S, Wade PA, Hu G, Jothi R.

Nucleic Acids Res. 2012 Apr;40(8):3364-77. doi: 10.1093/nar/gkr1253. Epub 2011 Dec 30.

PMID:
22210859
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

DOMINE: a comprehensive collection of known and predicted domain-domain interactions.

Yellaboina S, Tasneem A, Zaykin DV, Raghavachari B, Jothi R.

Nucleic Acids Res. 2011 Jan;39(Database issue):D730-5. doi: 10.1093/nar/gkq1229. Epub 2010 Nov 27.

PMID:
21113022
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Comparing transcription rate and mRNA abundance as parameters for biochemical pathway and network analysis.

Hayles B, Yellaboina S, Wang D.

PLoS One. 2010 Mar 26;5(3):e9908. doi: 10.1371/journal.pone.0009908.

PMID:
20361042
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Prediction of evolutionarily conserved interologs in Mus musculus.

Yellaboina S, Dudekula DB, Ko MSh.

BMC Genomics. 2008 Oct 8;9:465. doi: 10.1186/1471-2164-9-465.

PMID:
18842131
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genome scale portrait of cAMP-receptor protein (CRP) regulons in mycobacteria points to their role in pathogenesis.

Akhter Y, Yellaboina S, Farhana A, Ranjan A, Ahmed N, Hasnain SE.

Gene. 2008 Jan 15;407(1-2):148-58. Epub 2007 Oct 22.

PMID:
18022770
[PubMed - indexed for MEDLINE]
8.

Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: comparison with high-throughput experimental data.

Yellaboina S, Goyal K, Mande SC.

Genome Res. 2007 Apr;17(4):527-35. Epub 2007 Mar 5.

PMID:
17339371
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

iCR: a web tool to identify conserved targets of a regulatory protein across the multiple related prokaryotic species.

Ranjan S, Seshadri J, Vindal V, Yellaboina S, Ranjan A.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W584-7.

PMID:
16845075
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

IdeR in mycobacteria: from target recognition to physiological function.

Ranjan S, Yellaboina S, Ranjan A.

Crit Rev Microbiol. 2006;32(2):69-75. Review.

PMID:
16809230
[PubMed - indexed for MEDLINE]
11.

Comparative analysis of iron regulated genes in mycobacteria.

Yellaboina S, Ranjan S, Vindal V, Ranjan A.

FEBS Lett. 2006 May 15;580(11):2567-76. Epub 2006 Apr 12.

PMID:
16631750
[PubMed - indexed for MEDLINE]
Free Article
12.

Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis open reading frames.

Prakash P, Yellaboina S, Ranjan A, Hasnain SE.

Bioinformatics. 2005 May 15;21(10):2161-6. Epub 2005 Mar 3.

PMID:
15746274
[PubMed - indexed for MEDLINE]
Free Article
13.

Prediction of DtxR regulon: identification of binding sites and operons controlled by Diphtheria toxin repressor in Corynebacterium diphtheriae.

Yellaboina S, Ranjan S, Chakhaiyar P, Hasnain SE, Ranjan A.

BMC Microbiol. 2004 Sep 24;4:38.

PMID:
15447793
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

PredictRegulon: a web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes.

Yellaboina S, Seshadri J, Kumar MS, Ranjan A.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W318-20.

PMID:
15215402
[PubMed - indexed for MEDLINE]
Free PMC Article

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