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Items: 1 to 20 of 899

1.

Correction: Mps1Mph1 Kinase Phosphorylates Mad3 to Inhibit Cdc20Slp1-APC/C and Maintain Spindle Checkpoint Arrests.

Zich J, May K, Paraskevopoulos K, Sen O, Syred HM, van der Sar S, Patel H, Moresco JJ, Sarkeshik A, Yates JR 3rd, Rappsilber J, Hardwick KG.

PLoS Genet. 2016 Apr 21;12(4):e1006009. doi: 10.1371/journal.pgen.1006009. eCollection 2016 Apr.

2.

Spindle-E cycling between nuage and cytoplasm is controlled by Qin and PIWI proteins.

Andress A, Bei Y, Fonslow BR, Giri R, Wu Y, Yates JR 3rd, Carthew RW.

J Cell Biol. 2016 Apr 25;213(2):201-11. doi: 10.1083/jcb.201411076. Epub 2016 Apr 18.

PMID:
27091448
3.

Fimbrin phosphorylation by metaphase Cdk1 regulates actin cable dynamics in budding yeast.

Miao Y, Han X, Zheng L, Xie Y, Mu Y, Yates JR 3rd, Drubin DG.

Nat Commun. 2016 Apr 12;7:11265. doi: 10.1038/ncomms11265.

4.

PARP-1 Represses LXR-mediated ABCA1 Expression and Cholesterol Efflux in Macrophages.

Shrestha E, Hussein MA, Savas JN, Ouimet M, Barrett TJ, Leone S, Yates JR 3rd, Moore KJ, Fisher EA, Garabedian MJ.

J Biol Chem. 2016 Mar 29. pii: jbc.M116.726729. [Epub ahead of print]

5.

Reproducibility in density functional theory calculations of solids.

Lejaeghere K, Bihlmayer G, Björkman T, Blaha P, Blügel S, Blum V, Caliste D, Castelli IE, Clark SJ, Dal Corso A, de Gironcoli S, Deutsch T, Dewhurst JK, Di Marco I, Draxl C, Dułak M, Eriksson O, Flores-Livas JA, Garrity KF, Genovese L, Giannozzi P, Giantomassi M, Goedecker S, Gonze X, Grånäs O, Gross EK, Gulans A, Gygi F, Hamann DR, Hasnip PJ, Holzwarth NA, Iuşan D, Jochym DB, Jollet F, Jones D, Kresse G, Koepernik K, Küçükbenli E, Kvashnin YO, Locht IL, Lubeck S, Marsman M, Marzari N, Nitzsche U, Nordström L, Ozaki T, Paulatto L, Pickard CJ, Poelmans W, Probert MI, Refson K, Richter M, Rignanese GM, Saha S, Scheffler M, Schlipf M, Schwarz K, Sharma S, Tavazza F, Thunström P, Tkatchenko A, Torrent M, Vanderbilt D, van Setten MJ, Van Speybroeck V, Wills JM, Yates JR, Zhang GX, Cottenier S.

Science. 2016 Mar 25;351(6280):aad3000. doi: 10.1126/science.aad3000.

PMID:
27013736
6.

Using PSEA-Quant for Protein Set Enrichment Analysis of Quantitative Mass Spectrometry-Based Proteomics.

Lavallée-Adam M, Yates JR 3rd.

Curr Protoc Bioinformatics. 2016 Mar 24;53:13.28.1-13.28.16. doi: 10.1002/0471250953.bi1328s53.

PMID:
27010334
7.

Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides.

Ma J, Diedrich JK, Jungreis I, Donaldson C, Vaughan J, Kellis M, Yates JR 3rd, Saghatelian A.

Anal Chem. 2016 Apr 5;88(7):3967-75. doi: 10.1021/acs.analchem.6b00191. Epub 2016 Mar 24.

PMID:
27010111
8.

Correction: Degradation of HK2 by chaperone-mediated autophagy promotes metabolic catastrophe and cell death.

Xia HG, Najafov A, Geng J, Galan-Acosta L, Han X, Guo Y, Shan B, Zhang Y, Norberg E, Zhang T, Pan L, Liu J, Coloff JL, Ofengeim D, Zhu H, Wu K, Cai Y, Yates JR, Zhu Z, Yuan J, Vakifahmetoglu-Norberg H.

J Cell Biol. 2016 Mar 28;212(7):881-2. doi: 10.1083/jcb.20150304403082016c. Epub 2016 Mar 21. No abstract available.

9.

Nonsense-mediated decay regulates key components of homologous recombination.

Janke R, Kong J, Braberg H, Cantin G, Yates JR 3rd, Krogan NJ, Heyer WD.

Nucleic Acids Res. 2016 Mar 21. pii: gkw182. [Epub ahead of print]

10.

The proper connection between shelterin components is required for telomeric heterochromatin assembly.

Wang J, Cohen AL, Letian A, Tadeo X, Moresco JJ, Liu J, Yates JR 3rd, Qiao F, Jia S.

Genes Dev. 2016 Apr 1;30(7):827-39. doi: 10.1101/gad.266718.115. Epub 2016 Mar 17.

PMID:
26988418
11.

The Rqc2/Tae2 subunit of the ribosome-associated quality control (RQC) complex marks ribosome-stalled nascent polypeptide chains for aggregation.

Yonashiro R, Tahara EB, Bengtson MH, Khokhrina M, Lorenz H, Chen KC, Kigoshi-Tansho Y, Savas JN, Yates JR, Kay SA, Craig EA, Mogk A, Bukau B, Joazeiro CA.

Elife. 2016 Mar 4;5. pii: e11794. doi: 10.7554/eLife.11794.

12.

Comprehensive data analysis of human ureter proteome.

Magdeldin S, Hirao Y, El Guoshy A, Xu B, Zhang Y, Fujinaka H, Yamamoto K, Yates JR 3rd, Yamamoto T.

Data Brief. 2016 Feb 3;6:853-7. doi: 10.1016/j.dib.2016.01.050. eCollection 2016 Mar.

13.

Mps1Mph1 Kinase Phosphorylates Mad3 to Inhibit Cdc20Slp1-APC/C and Maintain Spindle Checkpoint Arrests.

Zich J, May K, Paraskevopoulos K, Sen O, Syred HM, van der Sar S, Patel H, Moresco JJ, Sarkeshik A, Yates JR 3rd, Rappsilber J, Hardwick KG.

PLoS Genet. 2016 Feb 16;12(2):e1005834. doi: 10.1371/journal.pgen.1005834. eCollection 2016 Feb. Erratum in: PLoS Genet. 2016 Apr;12(4):e1006009.

14.

Proteomic Analysis of Protein Turnover by Metabolic Whole Rodent Pulse-Chase Isotopic Labeling and Shotgun Mass Spectrometry Analysis.

Savas JN, Park SK, Yates JR 3rd.

Methods Mol Biol. 2016;1410:293-304. doi: 10.1007/978-1-4939-3524-6_18.

PMID:
26867752
15.

Venomous extract protein profile of Brazilian tarantula Grammostola iheringi: searching for potential biotechnological applications.

Borges MH, Figueiredo SG, Leprevost FV, De Lima ME, Cordeiro Mdo N, Diniz MR, Moresco J, Carvalho PC, Yates JR.

J Proteomics. 2016 Mar 16;136:35-47. doi: 10.1016/j.jprot.2016.01.013. Epub 2016 Jan 29.

PMID:
26828374
16.

Ixodes scapularis Tick Saliva Proteins Sequentially Secreted Every 24 h during Blood Feeding.

Kim TK, Tirloni L, Pinto AF, Moresco J, Yates JR 3rd, da Silva Vaz I Jr, Mulenga A.

PLoS Negl Trop Dis. 2016 Jan 11;10(1):e0004323. doi: 10.1371/journal.pntd.0004323. eCollection 2016 Jan.

17.

A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.

Fritsche LG, Igl W, Bailey JN, Grassmann F, Sengupta S, Bragg-Gresham JL, Burdon KP, Hebbring SJ, Wen C, Gorski M, Kim IK, Cho D, Zack D, Souied E, Scholl HP, Bala E, Lee KE, Hunter DJ, Sardell RJ, Mitchell P, Merriam JE, Cipriani V, Hoffman JD, Schick T, Lechanteur YT, Guymer RH, Johnson MP, Jiang Y, Stanton CM, Buitendijk GH, Zhan X, Kwong AM, Boleda A, Brooks M, Gieser L, Ratnapriya R, Branham KE, Foerster JR, Heckenlively JR, Othman MI, Vote BJ, Liang HH, Souzeau E, McAllister IL, Isaacs T, Hall J, Lake S, Mackey DA, Constable IJ, Craig JE, Kitchner TE, Yang Z, Su Z, Luo H, Chen D, Ouyang H, Flagg K, Lin D, Mao G, Ferreyra H, Stark K, von Strachwitz CN, Wolf A, Brandl C, Rudolph G, Olden M, Morrison MA, Morgan DJ, Schu M, Ahn J, Silvestri G, Tsironi EE, Park KH, Farrer LA, Orlin A, Brucker A, Li M, Curcio CA, Mohand-Saïd S, Sahel JA, Audo I, Benchaboune M, Cree AJ, Rennie CA, Goverdhan SV, Grunin M, Hagbi-Levi S, Campochiaro P, Katsanis N, Holz FG, Blond F, Blanché H, Deleuze JF, Igo RP Jr, Truitt B, Peachey NS, Meuer SM, Myers CE, Moore EL, Klein R, Hauser MA, Postel EA, Courtenay MD, Schwartz SG, Kovach JL, Scott WK, Liew G, Tan AG, Gopinath B, Merriam JC, Smith RT, Khan JC, Shahid H, Moore AT, McGrath JA, Laux R, Brantley MA Jr, Agarwal A, Ersoy L, Caramoy A, Langmann T, Saksens NT, de Jong EK, Hoyng CB, Cain MS, Richardson AJ, Martin TM, Blangero J, Weeks DE, Dhillon B, van Duijn CM, Doheny KF, Romm J, Klaver CC, Hayward C, Gorin MB, Klein ML, Baird PN, den Hollander AI, Fauser S, Yates JR, Allikmets R, Wang JJ, Schaumberg DA, Klein BE, Hagstrom SA, Chowers I, Lotery AJ, Léveillard T, Zhang K, Brilliant MH, Hewitt AW, Swaroop A, Chew EY, Pericak-Vance MA, DeAngelis M, Stambolian D, Haines JL, Iyengar SK, Weber BH, Abecasis GR, Heid IM.

Nat Genet. 2016 Feb;48(2):134-43. doi: 10.1038/ng.3448. Epub 2015 Dec 21.

PMID:
26691988
18.

Casein kinase II promotes target silencing by miRISC through direct phosphorylation of the DEAD-box RNA helicase CGH-1.

Alessi AF, Khivansara V, Han T, Freeberg MA, Moresco JJ, Tu PG, Montoye E, Yates JR 3rd, Karp X, Kim JK.

Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):E7213-22. doi: 10.1073/pnas.1509499112. Epub 2015 Dec 15.

19.

Physiological and Molecular Alterations Promoted by Schizotetranychus oryzae Mite Infestation in Rice Leaves.

Buffon G, Blasi ÉA, Adamski JM, Ferla NJ, Berger M, Santi L, Lavallée-Adam M, Yates JR 3rd, Beys-da-Silva WO, Sperotto RA.

J Proteome Res. 2016 Feb 5;15(2):431-46. doi: 10.1021/acs.jproteome.5b00729. Epub 2015 Dec 30.

PMID:
26667653
20.

Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0.

Carvalho PC, Lima DB, Leprevost FV, Santos MD, Fischer JS, Aquino PF, Moresco JJ, Yates JR 3rd, Barbosa VC.

Nat Protoc. 2016 Jan;11(1):102-17. doi: 10.1038/nprot.2015.133. Epub 2015 Dec 10.

PMID:
26658470
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