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Items: 6

1.

Predictive model of 3D domain formation via CTCF-mediated extrusion.

Yardımcı GG, Noble WS.

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14404-5. doi: 10.1073/pnas.1519849112. Epub 2015 Nov 13. No abstract available.

PMID:
26567152
2.

Transcriptional control of tissue formation throughout root development.

Moreno-Risueno MA, Sozzani R, Yardımcı GG, Petricka JJ, Vernoux T, Blilou I, Alonso J, Winter CM, Ohler U, Scheres B, Benfey PN.

Science. 2015 Oct 23;350(6259):426-30. doi: 10.1126/science.aad1171.

PMID:
26494755
3.

Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection.

Yardımcı GG, Frank CL, Crawford GE, Ohler U.

Nucleic Acids Res. 2014 Oct 29;42(19):11865-78. doi: 10.1093/nar/gku810. Epub 2014 Oct 7.

4.

Statistical evaluation of the Rodin-Ohno hypothesis: sense/antisense coding of ancestral class I and II aminoacyl-tRNA synthetases.

Chandrasekaran SN, Yardimci GG, Erdogan O, Roach J, Carter CW Jr.

Mol Biol Evol. 2013 Jul;30(7):1588-604. doi: 10.1093/molbev/mst070. Epub 2013 Apr 10.

5.

Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity.

Tewari AK, Yardimci GG, Shibata Y, Sheffield NC, Song L, Taylor BS, Georgiev SG, Coetzee GA, Ohler U, Furey TS, Crawford GE, Febbo PG.

Genome Biol. 2012 Oct 3;13(10):R88. doi: 10.1186/gb-2012-13-10-r88.

6.

Predicting cell-type-specific gene expression from regions of open chromatin.

Natarajan A, Yardimci GG, Sheffield NC, Crawford GE, Ohler U.

Genome Res. 2012 Sep;22(9):1711-22. doi: 10.1101/gr.135129.111.

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