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Items: 16

1.

Scaling up discovery of hidden diversity in fungi: impacts of barcoding approaches.

Yahr R, Schoch CL, Dentinger BT.

Philos Trans R Soc Lond B Biol Sci. 2016 Sep 5;371(1702). pii: 20150336. doi: 10.1098/rstb.2015.0336. Review.

2.

Evolution of complex symbiotic relationships in a morphologically derived family of lichen-forming fungi.

Divakar PK, Crespo A, Wedin M, Leavitt SD, Hawksworth DL, Myllys L, McCune B, Randlane T, Bjerke JW, Ohmura Y, Schmitt I, Boluda CG, Alors D, Roca-Valiente B, Del-Prado R, Ruibal C, Buaruang K, Núñez-Zapata J, Amo de Paz G, Rico VJ, Molina MC, Elix JA, Esslinger TL, Tronstad IK, Lindgren H, Ertz D, Gueidan C, Saag L, Mark K, Singh G, Dal Grande F, Parnmen S, Beck A, Benatti MN, Blanchon D, Candan M, Clerc P, Goward T, Grube M, Hodkinson BP, Hur JS, Kantvilas G, Kirika PM, Lendemer J, Mattsson JE, Messuti MI, Miadlikowska J, Nelsen M, Ohlson JI, Pérez-Ortega S, Saag A, Sipman HJ, Sohrabi M, Thell A, Thor G, Truong C, Yahr R, Upreti DK, Cubas P, Lumbsch HT.

New Phytol. 2015 Dec;208(4):1217-26. doi: 10.1111/nph.13553. Epub 2015 Aug 24.

PMID:
26299211
3.

Phylogenetic Diversity of Peltigera Cyanolichens and Their Photobionts in Southern Chile and Antarctica.

Zúñiga C, Leiva D, Ramírez-Fernández L, Carú M, Yahr R, Orlando J.

Microbes Environ. 2015;30(2):172-9. doi: 10.1264/jsme2.ME14156. Epub 2015 Apr 28.

4.

Microsatellite loci in two epiphytic lichens with contrasting dispersal modes: Nephroma laevigatum and N. parile (Nephromataceae).

Belinchón R, Ellis CJ, Yahr R.

Appl Plant Sci. 2014 Nov 3;2(11). pii: apps.1400080. doi: 10.3732/apps.1400080. eCollection 2014 Nov.

5.

Archaeobotanical evidence for climate as a driver of ecological community change across the anthropocene boundary.

Ellis CJ, Yahr R, Belinchón R, Coppins BJ.

Glob Chang Biol. 2014 Jul;20(7):2211-20. doi: 10.1111/gcb.12548. Epub 2014 Apr 15.

PMID:
24526603
6.

Testing the use of ITS rDNA and protein-coding genes in the generic and species delimitation of the lichen genus Usnea (Parmeliaceae, Ascomycota).

Truong C, Divakar PK, Yahr R, Crespo A, Clerc P.

Mol Phylogenet Evol. 2013 Aug;68(2):357-72. doi: 10.1016/j.ympev.2013.04.005. Epub 2013 Apr 16.

PMID:
23603312
7.

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi.

Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W; Fungal Barcoding Consortium; Fungal Barcoding Consortium Author List.

Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6241-6. doi: 10.1073/pnas.1117018109. Epub 2012 Mar 27.

8.

Archaeobotanical evidence for a massive loss of epiphyte species richness during industrialization in southern England.

Ellis CJ, Yahr R, Coppins BJ.

Proc Biol Sci. 2011 Dec 7;278(1724):3482-9. doi: 10.1098/rspb.2011.0063. Epub 2011 Apr 6.

9.

DNA barcoding of lichenized fungi demonstrates high identification success in a floristic context.

Kelly LJ, Hollingsworth PM, Coppins BJ, Ellis CJ, Harrold P, Tosh J, Yahr R.

New Phytol. 2011 Jul;191(1):288-300. doi: 10.1111/j.1469-8137.2011.03677.x. Epub 2011 Mar 22.

10.

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits.

Schoch CL, Sung GH, López-Giráldez F, Townsend JP, Miadlikowska J, Hofstetter V, Robbertse B, Matheny PB, Kauff F, Wang Z, Gueidan C, Andrie RM, Trippe K, Ciufetti LM, Wynns A, Fraker E, Hodkinson BP, Bonito G, Groenewald JZ, Arzanlou M, de Hoog GS, Crous PW, Hewitt D, Pfister DH, Peterson K, Gryzenhout M, Wingfield MJ, Aptroot A, Suh SO, Blackwell M, Hillis DM, Griffith GW, Castlebury LA, Rossman AY, Lumbsch HT, Lücking R, Büdel B, Rauhut A, Diederich P, Ertz D, Geiser DM, Hosaka K, Inderbitzin P, Kohlmeyer J, Volkmann-Kohlmeyer B, Mostert L, O'Donnell K, Sipman H, Rogers JD, Shoemaker RA, Sugiyama J, Summerbell RC, Untereiner W, Johnston PR, Stenroos S, Zuccaro A, Dyer PS, Crittenden PD, Cole MS, Hansen K, Trappe JM, Yahr R, Lutzoni F, Spatafora JW.

Syst Biol. 2009 Apr;58(2):224-39. doi: 10.1093/sysbio/syp020. Epub 2009 Jun 4.

PMID:
20525580
11.

New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes.

Miadlikowska J, Kauff F, Hofstetter V, Fraker E, Grube M, Hafellner J, Reeb V, Hodkinson BP, Kukwa M, Lücking R, Hestmark G, Otalora MG, Rauhut A, Büdel B, Scheidegger C, Timdal E, Stenroos S, Brodo I, Perlmutter GB, Ertz D, Diederich P, Lendemer JC, May P, Schoch CL, Arnold AE, Gueidan C, Tripp E, Yahr R, Robertson C, Lutzoni F.

Mycologia. 2006 Nov-Dec;98(6):1088-103.

12.

Reconstructing the early evolution of Fungi using a six-gene phylogeny.

James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, Stajich JE, Hosaka K, Sung GH, Johnson D, O'Rourke B, Crockett M, Binder M, Curtis JM, Slot JC, Wang Z, Wilson AW, Schüssler A, Longcore JE, O'Donnell K, Mozley-Standridge S, Porter D, Letcher PM, Powell MJ, Taylor JW, White MM, Griffith GW, Davies DR, Humber RA, Morton JB, Sugiyama J, Rossman AY, Rogers JD, Pfister DH, Hewitt D, Hansen K, Hambleton S, Shoemaker RA, Kohlmeyer J, Volkmann-Kohlmeyer B, Spotts RA, Serdani M, Crous PW, Hughes KW, Matsuura K, Langer E, Langer G, Untereiner WA, Lücking R, Büdel B, Geiser DM, Aptroot A, Diederich P, Schmitt I, Schultz M, Yahr R, Hibbett DS, Lutzoni F, McLaughlin DJ, Spatafora JW, Vilgalys R.

Nature. 2006 Oct 19;443(7113):818-22.

PMID:
17051209
13.

Geographic variation in algal partners of Cladonia subtenuis (Cladoniaceae) highlights the dynamic nature of a lichen symbiosis.

Yahr R, Vilgalys R, DePriest PT.

New Phytol. 2006;171(4):847-60. Erratum in: New Phytol. 2006;172(2):377.

14.

Strong fungal specificity and selectivity for algal symbionts in Florida scrub Cladonia lichens.

Yahr R, Vilgalys R, Depriest PT.

Mol Ecol. 2004 Nov;13(11):3367-78.

PMID:
15487996
15.

Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits.

Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, Miadlikowska J, Spatafora J, Johnson D, Hambleton S, Crockett M, Shoemaker R, Sung GH, Lücking R, Lumbsch T, O'Donnell K, Binder M, Diederich P, Ertz D, Gueidan C, Hansen K, Harris RC, Hosaka K, Lim YW, Matheny B, Nishida H, Pfister D, Rogers J, Rossman A, Schmitt I, Sipman H, Stone J, Sugiyama J, Yahr R, Vilgalys R.

Am J Bot. 2004 Oct;91(10):1446-80. doi: 10.3732/ajb.91.10.1446.

16.

Conservation implications of genetic variation in three rare species endemic to Florida rosemary scrub.

Dolan RW, Yahr R, Menges ES, Halfhill MD.

Am J Bot. 1999 Nov;86(11):1556-62.

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