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Results: 1 to 20 of 48

1.

Network analysis of breast cancer progression and reversal using a tree-evolving network algorithm.

Parikh AP, Curtis RE, Kuhn I, Becker-Weimann S, Bissell M, Xing EP, Wu W.

PLoS Comput Biol. 2014 Jul 24;10(7):e1003713. doi: 10.1371/journal.pcbi.1003713. eCollection 2014 Jul.

PMID:
25057922
[PubMed - in process]
Free PMC Article
2.

Kernel methods for large-scale genomic data analysis.

Wang X, Xing EP, Schaid DJ.

Brief Bioinform. 2014 Jul 22. pii: bbu024. [Epub ahead of print]

PMID:
25053743
[PubMed - as supplied by publisher]
3.

GWAS in a box: statistical and visual analytics of structured associations via GenAMap.

Xing EP, Curtis RE, Schoenherr G, Lee S, Yin J, Puniyani K, Wu W, Kinnaird P.

PLoS One. 2014 Jun 6;9(6):e97524. doi: 10.1371/journal.pone.0097524. eCollection 2014.

PMID:
24905018
[PubMed - in process]
Free PMC Article
4.

Effects of sample selection bias on the accuracy of population structure and ancestry inference.

Shringarpure S, Xing EP.

G3 (Bethesda). 2014 Mar 17;4(5):901-11. doi: 10.1534/g3.113.007633.

PMID:
24637351
[PubMed - in process]
Free PMC Article
5.

Robust reverse engineering of dynamic gene networks under sample size heterogeneity.

Parikh AP, Wu W, Xing EP.

Pac Symp Biocomput. 2014:265-76.

PMID:
24297553
[PubMed - in process]
Free Article
6.

NP-MuScL: unsupervised global prediction of interaction networks from multiple data sources.

Puniyani K, Xing EP.

J Comput Biol. 2013 Nov;20(11):892-904. doi: 10.1089/cmb.2013.0093. Epub 2013 Oct 17.

PMID:
24134391
[PubMed - indexed for MEDLINE]
7.

GINI: from ISH images to gene interaction networks.

Puniyani K, Xing EP.

PLoS Comput Biol. 2013;9(10):e1003227. doi: 10.1371/journal.pcbi.1003227. Epub 2013 Oct 10.

PMID:
24130465
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

High-dimensional feature selection by feature-wise kernelized Lasso.

Yamada M, Jitkrittum W, Sigal L, Xing EP, Sugiyama M.

Neural Comput. 2014 Jan;26(1):185-207. doi: 10.1162/NECO_a_00537. Epub 2013 Oct 8.

PMID:
24102126
[PubMed - in process]
9.

Structured association analysis leads to insight into Saccharomyces cerevisiae gene regulation by finding multiple contributing eQTL hotspots associated with functional gene modules.

Curtis RE, Kim S, Woolford JL Jr, Xu W, Xing EP.

BMC Genomics. 2013 Mar 21;14:196. doi: 10.1186/1471-2164-14-196.

PMID:
23514438
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Enabling dynamic network analysis through visualization in TVNViewer.

Curtis RE, Xiang J, Parikh A, Kinnaird P, Xing EP.

BMC Bioinformatics. 2012 Aug 16;13:204.

PMID:
22897913
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Leveraging input and output structures for joint mapping of epistatic and marginal eQTLs.

Lee S, Xing EP.

Bioinformatics. 2012 Jun 15;28(12):i137-46. doi: 10.1093/bioinformatics/bts227.

PMID:
22689753
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Robust estimation of local genetic ancestry in admixed populations using a nonparametric Bayesian approach.

Sohn KA, Ghahramani Z, Xing EP.

Genetics. 2012 Aug;191(4):1295-308. doi: 10.1534/genetics.112.140228. Epub 2012 May 29.

PMID:
22649082
[PubMed - indexed for MEDLINE]
Free PMC Article
13.
14.

Large-margin predictive latent subspace learning for multiview data analysis.

Chen N, Zhu J, Sun F, Xing EP.

IEEE Trans Pattern Anal Mach Intell. 2012 Dec;34(12):2365-78.

PMID:
22392706
[PubMed]
15.

Estimating networks with jumps.

Kolar M, Xing EP.

Electron J Stat. 2012;6:2069-2106.

PMID:
25013533
[PubMed]
Free PMC Article
16.

Multiscale Community Blockmodel for Network Exploration.

Ho Q, Parikh AP, Xing EP.

J Am Stat Assoc. 2012;107(499). doi: 10.1080/01621459.2012.682530.

PMID:
24288419
[PubMed]
Free PMC Article
17.

Finding genome-transcriptome-phenome association with structured association mapping and visualization in GenAMap.

Curtis RE, Yin J, Kinnaird P, Xing EP.

Pac Symp Biocomput. 2012:327-38.

PMID:
22174288
[PubMed - indexed for MEDLINE]
Free Article
18.

StructHDP: automatic inference of number of clusters and population structure from admixed genotype data.

Shringarpure S, Won D, Xing EP.

Bioinformatics. 2011 Jul 1;27(13):i324-32. doi: 10.1093/bioinformatics/btr242.

PMID:
21685088
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

TREEGL: reverse engineering tree-evolving gene networks underlying developing biological lineages.

Parikh AP, Wu W, Curtis RE, Xing EP.

Bioinformatics. 2011 Jul 1;27(13):i196-204. doi: 10.1093/bioinformatics/btr239.

PMID:
21685070
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

TVNViewer: an interactive visualization tool for exploring networks that change over time or space.

Curtis RE, Yuen A, Song L, Goyal A, Xing EP.

Bioinformatics. 2011 Jul 1;27(13):1880-1. doi: 10.1093/bioinformatics/btr273. Epub 2011 May 5.

PMID:
21551142
[PubMed - indexed for MEDLINE]
Free PMC Article

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