Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 15

1.

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.

Hu JC, Sherlock G, Siegele DA, Aleksander SA, Ball CA, Demeter J, Gouni S, Holland TA, Karp PD, Lewis JE, Liles NM, McIntosh BK, Mi H, Muruganujan A, Wymore F, Thomas PD.

Nucleic Acids Res. 2014 Jan;42(Database issue):D677-84. doi: 10.1093/nar/gkt1203. Epub 2013 Nov 26.

PMID:
24285306
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.

Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR.

Nucleic Acids Res. 2014 Jan;42(Database issue):D705-10. doi: 10.1093/nar/gkt1029. Epub 2013 Nov 4.

PMID:
24194595
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The Candida Genome Database: the new homology information page highlights protein similarity and phylogeny.

Binkley J, Arnaud MB, Inglis DO, Skrzypek MS, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G.

Nucleic Acids Res. 2014 Jan;42(Database issue):D711-6. doi: 10.1093/nar/gkt1046. Epub 2013 Oct 31.

PMID:
24185697
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae.

Inglis DO, Binkley J, Skrzypek MS, Arnaud MB, Cerqueira GC, Shah P, Wymore F, Wortman JR, Sherlock G.

BMC Microbiol. 2013 Apr 26;13:91. doi: 10.1186/1471-2180-13-91.

PMID:
23617571
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Improved gene ontology annotation for biofilm formation, filamentous growth, and phenotypic switching in Candida albicans.

Inglis DO, Skrzypek MS, Arnaud MB, Binkley J, Shah P, Wymore F, Sherlock G.

Eukaryot Cell. 2013 Jan;12(1):101-8. doi: 10.1128/EC.00238-12. Epub 2012 Nov 9.

PMID:
23143685
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.

Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, Wortman JR.

Nucleic Acids Res. 2012 Jan;40(Database issue):D653-9. doi: 10.1093/nar/gkr875. Epub 2011 Nov 12.

PMID:
22080559
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata.

Inglis DO, Arnaud MB, Binkley J, Shah P, Skrzypek MS, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G.

Nucleic Acids Res. 2012 Jan;40(Database issue):D667-74. doi: 10.1093/nar/gkr945. Epub 2011 Nov 7.

PMID:
22064862
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

TB database 2010: overview and update.

Galagan JE, Sisk P, Stolte C, Weiner B, Koehrsen M, Wymore F, Reddy TB, Zucker JD, Engels R, Gellesch M, Hubble J, Jin H, Larson L, Mao M, Nitzberg M, White J, Zachariah ZK, Sherlock G, Ball CA, Schoolnik GK.

Tuberculosis (Edinb). 2010 Jul;90(4):225-35. doi: 10.1016/j.tube.2010.03.010. Epub 2010 May 20. Review.

PMID:
20488753
[PubMed - indexed for MEDLINE]
9.

Implementation of GenePattern within the Stanford Microarray Database.

Hubble J, Demeter J, Jin H, Mao M, Nitzberg M, Reddy TB, Wymore F, Zachariah ZK, Sherlock G, Ball CA.

Nucleic Acids Res. 2009 Jan;37(Database issue):D898-901. doi: 10.1093/nar/gkn786. Epub 2008 Oct 25.

PMID:
18953035
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

TB database: an integrated platform for tuberculosis research.

Reddy TB, Riley R, Wymore F, Montgomery P, DeCaprio D, Engels R, Gellesch M, Hubble J, Jen D, Jin H, Koehrsen M, Larson L, Mao M, Nitzberg M, Sisk P, Stolte C, Weiner B, White J, Zachariah ZK, Sherlock G, Galagan JE, Ball CA, Schoolnik GK.

Nucleic Acids Res. 2009 Jan;37(Database issue):D499-508. doi: 10.1093/nar/gkn652. Epub 2008 Oct 3.

PMID:
18835847
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The XBabelPhish MAGE-ML and XML translator.

Maier D, Wymore F, Sherlock G, Ball CA.

BMC Bioinformatics. 2008 Jan 18;9:28. doi: 10.1186/1471-2105-9-28.

PMID:
18205924
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

OntologyWidget - a reusable, embeddable widget for easily locating ontology terms.

Beauheim CC, Wymore F, Nitzberg M, Zachariah ZK, Jin H, Skene JH, Ball CA, Sherlock G.

BMC Bioinformatics. 2007 Sep 13;8:338.

PMID:
17854506
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The Stanford Microarray Database: implementation of new analysis tools and open source release of software.

Demeter J, Beauheim C, Gollub J, Hernandez-Boussard T, Jin H, Maier D, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G, Ball CA.

Nucleic Acids Res. 2007 Jan;35(Database issue):D766-70. Epub 2006 Dec 20.

PMID:
17182626
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.

Rayner TF, Rocca-Serra P, Spellman PT, Causton HC, Farne A, Holloway E, Irizarry RA, Liu J, Maier DS, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert CJ Jr, White J, Whetzel PL, Wymore F, Parkinson H, Sarkans U, Ball CA, Brazma A.

BMC Bioinformatics. 2006 Nov 6;7:489.

PMID:
17087822
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The Stanford Microarray Database accommodates additional microarray platforms and data formats.

Ball CA, Awad IA, Demeter J, Gollub J, Hebert JM, Hernandez-Boussard T, Jin H, Matese JC, Nitzberg M, Wymore F, Zachariah ZK, Brown PO, Sherlock G.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D580-2.

PMID:
15608265
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk