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A systems biology approach toward understanding seed composition in soybean.

Li L, Hur M, Lee JY, Zhou W, Song Z, Ransom N, Demirkale CY, Nettleton D, Westgate M, Arendsee Z, Iyer V, Shanks J, Nikolau B, Wurtele ES.

BMC Genomics. 2015;16 Suppl 3:S9. doi: 10.1186/1471-2164-16-S3-S9. Epub 2015 Jan 29.


Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis using a genome-scale metabolic network.

Kim T, Dreher K, Nilo-Poyanco R, Lee I, Fiehn O, Lange BM, Nikolau BJ, Sumner L, Welti R, Wurtele ES, Rhee SY.

Plant Physiol. 2015 Apr;167(4):1685-98. doi: 10.1104/pp.114.252361. Epub 2015 Feb 10.


Coming of age: orphan genes in plants.

Arendsee ZW, Li L, Wurtele ES.

Trends Plant Sci. 2014 Nov;19(11):698-708.


The QQS orphan gene of Arabidopsis modulates carbon and nitrogen allocation in soybean.

Li L, Wurtele ES.

Plant Biotechnol J. 2015 Feb;13(2):177-87. doi: 10.1111/pbi.12238. Epub 2014 Aug 22.


Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis.

Fukushima A, Kusano M, Mejia RF, Iwasa M, Kobayashi M, Hayashi N, Watanabe-Takahashi A, Narisawa T, Tohge T, Hur M, Wurtele ES, Nikolau BJ, Saito K.

Plant Physiol. 2014 May 14;165(3):948-961. [Epub ahead of print]


Holocarboxylase synthetase 1 physically interacts with histone h3 in Arabidopsis.

Chen X, Chou HH, Wurtele ES.

Scientifica (Cairo). 2013;2013:983501. doi: 10.1155/2013/983501. Epub 2013 Feb 12.


Automatic extraction of biomolecular interactions: an empirical approach.

Zhang L, Berleant D, Ding J, Wurtele ES.

BMC Bioinformatics. 2013 Jul 24;14:234. doi: 10.1186/1471-2105-14-234.


Comprehensive analysis of correlation coefficients estimated from pooling heterogeneous microarray data.

Almeida-de-Macedo MM, Ransom N, Feng Y, Hurst J, Wurtele ES.

BMC Bioinformatics. 2013 Jul 4;14:214. doi: 10.1186/1471-2105-14-214.


Identification and biosynthesis of acylphloroglucinols in Hypericum gentianoides.

Crispin MC, Hur M, Park T, Kim YH, Wurtele ES.

Physiol Plant. 2013 Jul;148(3):354-70. doi: 10.1111/ppl.12063. Epub 2013 May 24.


A global approach to analysis and interpretation of metabolic data for plant natural product discovery.

Hur M, Campbell AA, Almeida-de-Macedo M, Li L, Ransom N, Jose A, Crispin M, Nikolau BJ, Wurtele ES.

Nat Prod Rep. 2013 Apr;30(4):565-83. doi: 10.1039/c3np20111b. Review.


Functional identification of valerena-1,10-diene synthase, a terpene synthase catalyzing a unique chemical cascade in the biosynthesis of biologically active sesquiterpenes in Valeriana officinalis.

Yeo YS, Nybo SE, Chittiboyina AG, Weerasooriya AD, Wang YH, Góngora-Castillo E, Vaillancourt B, Buell CR, DellaPenna D, Celiz MD, Jones AD, Wurtele ES, Ransom N, Dudareva N, Shaaban KA, Tibrewal N, Chandra S, Smillie T, Khan IA, Coates RM, Watt DS, Chappell J.

J Biol Chem. 2013 Feb 1;288(5):3163-73. doi: 10.1074/jbc.M112.415836. Epub 2012 Dec 14.


MetNet Online: a novel integrated resource for plant systems biology.

Sucaet Y, Wang Y, Li J, Wurtele ES.

BMC Bioinformatics. 2012 Oct 15;13:267. doi: 10.1186/1471-2105-13-267.


BirdsEyeView (BEV): graphical overviews of experimental data.

Zhang L, Berleant D, Wang Y, Li L, Cook D, Wurtele ES.

BMC Bioinformatics. 2012;13 Suppl 15:S11. doi: 10.1186/1471-2105-13-S15-S11. Epub 2012 Sep 11.


Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function".

Quanbeck SM, Brachova L, Campbell AA, Guan X, Perera A, He K, Rhee SY, Bais P, Dickerson JA, Dixon P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Lange BM, Lee I, Cortes D, Salazar C, Shuman J, Shulaev V, Huhman DV, Sumner LW, Roth MR, Welti R, Ilarslan H, Wurtele ES, Nikolau BJ.

Front Plant Sci. 2012 Feb 10;3:15. doi: 10.3389/fpls.2012.00015. eCollection 2012.


Evolution of the chalcone-isomerase fold from fatty-acid binding to stereospecific catalysis.

Ngaki MN, Louie GV, Philippe RN, Manning G, Pojer F, Bowman ME, Li L, Larsen E, Wurtele ES, Noel JP.

Nature. 2012 May 13;485(7399):530-3. doi: 10.1038/nature11009.


Massive human co-expression network and its medical applications.

Feng Y, Hurst J, Almeida-De-Macedo M, Chen X, Li L, Ransom N, Wurtele ES.

Chem Biodivers. 2012 May;9(5):868-87. doi: 10.1002/cbdv.201100355.


Genetic dissection of methylcrotonyl CoA carboxylase indicates a complex role for mitochondrial leucine catabolism during seed development and germination.

Ding G, Che P, Ilarslan H, Wurtele ES, Nikolau BJ.

Plant J. 2012 May;70(4):562-77. doi: 10.1111/j.1365-313X.2011.04893.x. Epub 2012 Feb 6.


Medicinal plants: a public resource for metabolomics and hypothesis development.

Wurtele ES, Chappell J, Jones AD, Celiz MD, Ransom N, Hur M, Rizshsky L, Crispin M, Dixon P, Liu J, P Widrlechner M, Nikolau BJ.

Metabolites. 2012 Nov 21;2(4):1031-59. doi: 10.3390/metabo2041031.


AtRabD2b and AtRabD2c have overlapping functions in pollen development and pollen tube growth.

Peng J, Ilarslan H, Wurtele ES, Bassham DC.

BMC Plant Biol. 2011 Jan 26;11:25. doi: 10.1186/1471-2229-11-25.


Echinacea-induced cytosolic Ca2+ elevation in HEK293.

Wu L, Rowe EW, Jeftinija K, Jeftinija S, Rizshsky L, Nikolau BJ, McKay J, Kohut M, Wurtele ES.

BMC Complement Altern Med. 2010 Nov 23;10:72. doi: 10.1186/1472-6882-10-72.

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