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Items: 1 to 20 of 101

1.

Integrating metabolomics and transcriptomics data to discover a biocatalyst that can generate the amine precursors for alkamide biosynthesis.

Rizhsky L, Jin H, Shepard MR, Scott HW, Teitgen AM, Perera MA, Mhaske V, Jose A, Zheng X, Crispin M, Wurtele ES, Jones D, Hur M, Góngora-Castillo E, Buell CR, Minto RE, Nikolau BJ.

Plant J. 2016 Aug 6. doi: 10.1111/tpj.13295. [Epub ahead of print]

PMID:
27497272
2.

A Clade-Specific Arabidopsis Gene Connects Primary Metabolism and Senescence.

Jones DC, Zheng W, Huang S, Du C, Zhao X, Yennamalli RM, Sen TZ, Nettleton D, Wurtele ES, Li L.

Front Plant Sci. 2016 Jul 12;7:983. doi: 10.3389/fpls.2016.00983. eCollection 2016.

3.

Microbial Community and Chemical Characteristics of Swine Manure during Maturation.

Trabue SL, Kerr BJ, Bearson BL, Hur M, Parkin T, Wurtele ES, Ziemer CJ.

J Environ Qual. 2016 Jul;45(4):1144-52. doi: 10.2134/jeq2015.09.0446.

PMID:
27380061
4.

QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions.

Li L, Zheng W, Zhu Y, Ye H, Tang B, Arendsee ZW, Jones D, Li R, Ortiz D, Zhao X, Du C, Nettleton D, Scott MP, Salas-Fernandez MG, Yin Y, Wurtele ES.

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14734-9. doi: 10.1073/pnas.1514670112. Epub 2015 Nov 9.

5.

Modifications of membrane lipids in response to wounding of Arabidopsis thaliana leaves.

Vu HS, Roston R, Shiva S, Hur M, Wurtele ES, Wang X, Shah J, Welti R.

Plant Signal Behav. 2015;10(9):e1056422. doi: 10.1080/15592324.2015.1056422.

6.

ArcA Controls Metabolism, Chemotaxis, and Motility Contributing to the Pathogenicity of Avian Pathogenic Escherichia coli.

Jiang F, An C, Bao Y, Zhao X, Jernigan RL, Lithio A, Nettleton D, Li L, Wurtele ES, Nolan LK, Lu C, Li G.

Infect Immun. 2015 Sep;83(9):3545-54. doi: 10.1128/IAI.00312-15. Epub 2015 Jun 22.

7.

A systems biology approach toward understanding seed composition in soybean.

Li L, Hur M, Lee JY, Zhou W, Song Z, Ransom N, Demirkale CY, Nettleton D, Westgate M, Arendsee Z, Iyer V, Shanks J, Nikolau B, Wurtele ES.

BMC Genomics. 2015;16 Suppl 3:S9. doi: 10.1186/1471-2164-16-S3-S9. Epub 2015 Jan 29.

8.

Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis using a genome-scale metabolic network.

Kim T, Dreher K, Nilo-Poyanco R, Lee I, Fiehn O, Lange BM, Nikolau BJ, Sumner L, Welti R, Wurtele ES, Rhee SY.

Plant Physiol. 2015 Apr;167(4):1685-98. doi: 10.1104/pp.114.252361. Epub 2015 Feb 10.

9.

Coming of age: orphan genes in plants.

Arendsee ZW, Li L, Wurtele ES.

Trends Plant Sci. 2014 Nov;19(11):698-708. Review.

PMID:
25151064
10.

The QQS orphan gene of Arabidopsis modulates carbon and nitrogen allocation in soybean.

Li L, Wurtele ES.

Plant Biotechnol J. 2015 Feb;13(2):177-87. doi: 10.1111/pbi.12238. Epub 2014 Aug 22.

11.

Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis.

Fukushima A, Kusano M, Mejia RF, Iwasa M, Kobayashi M, Hayashi N, Watanabe-Takahashi A, Narisawa T, Tohge T, Hur M, Wurtele ES, Nikolau BJ, Saito K.

Plant Physiol. 2014 May 14;165(3):948-961. [Epub ahead of print]

12.

Holocarboxylase synthetase 1 physically interacts with histone h3 in Arabidopsis.

Chen X, Chou HH, Wurtele ES.

Scientifica (Cairo). 2013;2013:983501. doi: 10.1155/2013/983501. Epub 2013 Feb 12.

13.

Automatic extraction of biomolecular interactions: an empirical approach.

Zhang L, Berleant D, Ding J, Wurtele ES.

BMC Bioinformatics. 2013 Jul 24;14:234. doi: 10.1186/1471-2105-14-234.

14.

Comprehensive analysis of correlation coefficients estimated from pooling heterogeneous microarray data.

Almeida-de-Macedo MM, Ransom N, Feng Y, Hurst J, Wurtele ES.

BMC Bioinformatics. 2013 Jul 4;14:214. doi: 10.1186/1471-2105-14-214.

15.

Identification and biosynthesis of acylphloroglucinols in Hypericum gentianoides.

Crispin MC, Hur M, Park T, Kim YH, Wurtele ES.

Physiol Plant. 2013 Jul;148(3):354-70. doi: 10.1111/ppl.12063. Epub 2013 May 24.

16.

A global approach to analysis and interpretation of metabolic data for plant natural product discovery.

Hur M, Campbell AA, Almeida-de-Macedo M, Li L, Ransom N, Jose A, Crispin M, Nikolau BJ, Wurtele ES.

Nat Prod Rep. 2013 Apr;30(4):565-83. doi: 10.1039/c3np20111b. Review.

17.

Functional identification of valerena-1,10-diene synthase, a terpene synthase catalyzing a unique chemical cascade in the biosynthesis of biologically active sesquiterpenes in Valeriana officinalis.

Yeo YS, Nybo SE, Chittiboyina AG, Weerasooriya AD, Wang YH, Góngora-Castillo E, Vaillancourt B, Buell CR, DellaPenna D, Celiz MD, Jones AD, Wurtele ES, Ransom N, Dudareva N, Shaaban KA, Tibrewal N, Chandra S, Smillie T, Khan IA, Coates RM, Watt DS, Chappell J.

J Biol Chem. 2013 Feb 1;288(5):3163-73. doi: 10.1074/jbc.M112.415836. Epub 2012 Dec 14.

18.

MetNet Online: a novel integrated resource for plant systems biology.

Sucaet Y, Wang Y, Li J, Wurtele ES.

BMC Bioinformatics. 2012 Oct 15;13:267. doi: 10.1186/1471-2105-13-267.

19.

BirdsEyeView (BEV): graphical overviews of experimental data.

Zhang L, Berleant D, Wang Y, Li L, Cook D, Wurtele ES.

BMC Bioinformatics. 2012;13 Suppl 15:S11. doi: 10.1186/1471-2105-13-S15-S11. Epub 2012 Sep 11.

20.

Metabolomics as a Hypothesis-Generating Functional Genomics Tool for the Annotation of Arabidopsis thaliana Genes of "Unknown Function".

Quanbeck SM, Brachova L, Campbell AA, Guan X, Perera A, He K, Rhee SY, Bais P, Dickerson JA, Dixon P, Wohlgemuth G, Fiehn O, Barkan L, Lange I, Lange BM, Lee I, Cortes D, Salazar C, Shuman J, Shulaev V, Huhman DV, Sumner LW, Roth MR, Welti R, Ilarslan H, Wurtele ES, Nikolau BJ.

Front Plant Sci. 2012 Feb 10;3:15. doi: 10.3389/fpls.2012.00015. eCollection 2012.

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