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Items: 1 to 20 of 99

1.

Whole-Genome Sequences of Agricultural, Host-Associated Campylobacter coli and Campylobacter jejuni Strains.

Dutta V, Altermann E, Olson J, Wray GA, Siletzky RM, Kathariou S.

Genome Announc. 2016 Aug 18;4(4). pii: e00833-16. doi: 10.1128/genomeA.00833-16.

2.

Comparative Developmental Transcriptomics Reveals Rewiring of a Highly Conserved Gene Regulatory Network during a Major Life History Switch in the Sea Urchin Genus Heliocidaris.

Israel JW, Martik ML, Byrne M, Raff EC, Raff RA, McClay DR, Wray GA.

PLoS Biol. 2016 Mar 4;14(3):e1002391. doi: 10.1371/journal.pbio.1002391. eCollection 2016 Mar. Erratum in: PLoS Biol. 2016 Jun;14(6):e1002489.

3.

EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms.

Janies DA, Witter Z, Linchangco GV, Foltz DW, Miller AK, Kerr AM, Jay J, Reid RW, Wray GA.

BMC Bioinformatics. 2016 Jan 22;17:48. doi: 10.1186/s12859-016-0883-2.

4.

The PsychENCODE project.

PsychENCODE Consortium, Akbarian S, Liu C, Knowles JA, Vaccarino FM, Farnham PJ, Crawford GE, Jaffe AE, Pinto D, Dracheva S, Geschwind DH, Mill J, Nairn AC, Abyzov A, Pochareddy S, Prabhakar S, Weissman S, Sullivan PF, State MW, Weng Z, Peters MA, White KP, Gerstein MB, Amiri A, Armoskus C, Ashley-Koch AE, Bae T, Beckel-Mitchener A, Berman BP, Coetzee GA, Coppola G, Francoeur N, Fromer M, Gao R, Grennan K, Herstein J, Kavanagh DH, Ivanov NA, Jiang Y, Kitchen RR, Kozlenkov A, Kundakovic M, Li M, Li Z, Liu S, Mangravite LM, Mattei E, Markenscoff-Papadimitriou E, Navarro FC, North N, Omberg L, Panchision D, Parikshak N, Poschmann J, Price AJ, Purcaro M, Reddy TE, Roussos P, Schreiner S, Scuderi S, Sebra R, Shibata M, Shieh AW, Skarica M, Sun W, Swarup V, Thomas A, Tsuji J, van Bakel H, Wang D, Wang Y, Wang K, Werling DM, Willsey AJ, Witt H, Won H, Wong CC, Wray GA, Wu EY, Xu X, Yao L, Senthil G, Lehner T, Sklar P, Sestan N.

Nat Neurosci. 2015 Dec;18(12):1707-12. doi: 10.1038/nn.4156. Review. No abstract available.

5.

Molecular clocks and the early evolution of metazoan nervous systems.

Wray GA.

Philos Trans R Soc Lond B Biol Sci. 2015 Dec 19;370(1684). pii: 20150046. doi: 10.1098/rstb.2015.0046. Review.

PMID:
26554040
6.

Evolutionary Divergence of Gene and Protein Expression in the Brains of Humans and Chimpanzees.

Bauernfeind AL, Soderblom EJ, Turner ME, Moseley MA, Ely JJ, Hof PR, Sherwood CC, Wray GA, Babbitt CC.

Genome Biol Evol. 2015 Jul 10;7(8):2276-88. doi: 10.1093/gbe/evv132.

7.

Transcriptomic analysis of Nodal- and BMP-associated genes during juvenile development of the sea urchin Heliocidaris erythrogramma.

Byrne M, Koop D, Cisternas P, Strbenac D, Yang JY, Wray GA.

Mar Genomics. 2015 Dec;24 Pt 1:41-5. doi: 10.1016/j.margen.2015.05.019. Epub 2015 Jun 9.

PMID:
26066611
8.

High spatial resolution proteomic comparison of the brain in humans and chimpanzees.

Bauernfeind AL, Reyzer ML, Caprioli RM, Ely JJ, Babbitt CC, Wray GA, Hof PR, Sherwood CC.

J Comp Neurol. 2015 Oct 1;523(14):2043-61. doi: 10.1002/cne.23777. Epub 2015 Jul 14.

PMID:
25779868
9.

Human-chimpanzee differences in a FZD8 enhancer alter cell-cycle dynamics in the developing neocortex.

Boyd JL, Skove SL, Rouanet JP, Pilaz LJ, Bepler T, Gordân R, Wray GA, Silver DL.

Curr Biol. 2015 Mar 16;25(6):772-9. doi: 10.1016/j.cub.2015.01.041. Epub 2015 Feb 19.

10.

Does evolutionary theory need a rethink?

Laland K, Uller T, Feldman M, Sterelny K, Müller GB, Moczek A, Jablonka E, Odling-Smee J, Wray GA, Hoekstra HE, Futuyma DJ, Lenski RE, Mackay TF, Schluter D, Strassmann JE.

Nature. 2014 Oct 9;514(7521):161-4. doi: 10.1038/514161a. No abstract available.

PMID:
25297418
11.

Genetic comparisons yield insight into the evolution of enamel thickness during human evolution.

Horvath JE, Ramachandran GL, Fedrigo O, Nielsen WJ, Babbitt CC, St Clair EM, Pfefferle LW, Jernvall J, Wray GA, Wall CE.

J Hum Evol. 2014 Aug;73:75-87. doi: 10.1016/j.jhevol.2014.01.005. Epub 2014 May 5.

PMID:
24810709
12.

Transcriptomic analysis of the highly derived radial body plan of a sea urchin.

Wygoda JA, Yang Y, Byrne M, Wray GA.

Genome Biol Evol. 2014 Apr;6(4):964-73. doi: 10.1093/gbe/evu070.

13.

Analysis of synaptic gene expression in the neocortex of primates reveals evolutionary changes in glutamatergic neurotransmission.

Muntané G, Horvath JE, Hof PR, Ely JJ, Hopkins WD, Raghanti MA, Lewandowski AH, Wray GA, Sherwood CC.

Cereb Cortex. 2015 Jun;25(6):1596-607. doi: 10.1093/cercor/bht354. Epub 2014 Jan 9.

14.

The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network.

Garfield DA, Runcie DE, Babbitt CC, Haygood R, Nielsen WJ, Wray GA.

PLoS Biol. 2013 Oct;11(10):e1001696. doi: 10.1371/journal.pbio.1001696. Epub 2013 Oct 29.

15.
16.

Social environment influences the relationship between genotype and gene expression in wild baboons.

Runcie DE, Wiedmann RT, Archie EA, Altmann J, Wray GA, Alberts SC, Tung J.

Philos Trans R Soc Lond B Biol Sci. 2013 Apr 8;368(1618):20120345. doi: 10.1098/rstb.2012.0345. Print 2013 May 19.

17.

Population genetics of cis-regulatory sequences that operate during embryonic development in the sea urchin Strongylocentrotus purpuratus.

Garfield D, Haygood R, Nielsen WJ, Wray GA.

Evol Dev. 2012 Mar-Apr;14(2):152-67. doi: 10.1111/j.1525-142X.2012.00532.x.

PMID:
23017024
18.

Genetics of gene expression responses to temperature stress in a sea urchin gene network.

Runcie DE, Garfield DA, Babbitt CC, Wygoda JA, Mukherjee S, Wray GA.

Mol Ecol. 2012 Sep;21(18):4547-62. doi: 10.1111/j.1365-294X.2012.05717.x. Epub 2012 Aug 1.

19.

Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.

Shibata Y, Sheffield NC, Fedrigo O, Babbitt CC, Wortham M, Tewari AK, London D, Song L, Lee BK, Iyer VR, Parker SC, Margulies EH, Wray GA, Furey TS, Crawford GE.

PLoS Genet. 2012 Jun;8(6):e1002789. doi: 10.1371/journal.pgen.1002789. Epub 2012 Jun 28.

20.

Changes in gene expression associated with reproductive maturation in wild female baboons.

Babbitt CC, Tung J, Wray GA, Alberts SC.

Genome Biol Evol. 2012;4(2):102-9. doi: 10.1093/gbe/evr134. Epub 2011 Dec 8.

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