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Results: 1 to 20 of 97

1.

Large scale identification and categorization of protein sequences using structured logistic regression.

Pedersen BP, Ifrim G, Liboriussen P, Axelsen KB, Palmgren MG, Nissen P, Wiuf C, Pedersen CN.

PLoS One. 2014 Jan 20;9(1):e85139. doi: 10.1371/journal.pone.0085139. eCollection 2014.

PMID:
24465495
[PubMed - in process]
Free PMC Article
2.

Phosphorelays provide tunable signal processing capabilities for the cell.

Kothamachu VB, Feliu E, Wiuf C, Cardelli L, Soyer OS.

PLoS Comput Biol. 2013;9(11):e1003322. doi: 10.1371/journal.pcbi.1003322. Epub 2013 Nov 7.

PMID:
24244132
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Simplifying biochemical models with intermediate species.

Feliu E, Wiuf C.

J R Soc Interface. 2013 Jul 24;10(87):20130484. doi: 10.1098/rsif.2013.0484. Print 2013 Oct 6.

PMID:
23883954
[PubMed - indexed for MEDLINE]
4.

A computational method to preclude multistationarity in networks of interacting species.

Feliu E, Wiuf C.

Bioinformatics. 2013 Sep 15;29(18):2327-34. doi: 10.1093/bioinformatics/btt400. Epub 2013 Jul 9.

PMID:
23842805
[PubMed - indexed for MEDLINE]
5.

Cellular compartments cause multistability and allow cells to process more information.

Harrington HA, Feliu E, Wiuf C, Stumpf MP.

Biophys J. 2013 Apr 16;104(8):1824-31. doi: 10.1016/j.bpj.2013.02.028.

PMID:
23601329
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci.

Børglum AD, Demontis D, Grove J, Pallesen J, Hollegaard MV, Pedersen CB, Hedemand A, Mattheisen M; GROUP investigators10, Uitterlinden A, Nyegaard M, Ørntoft T, Wiuf C, Didriksen M, Nordentoft M, Nöthen MM, Rietschel M, Ophoff RA, Cichon S, Yolken RH, Hougaard DM, Mortensen PB, Mors O.

Mol Psychiatry. 2014 Mar;19(3):325-33. doi: 10.1038/mp.2013.2. Epub 2013 Jan 29.

PMID:
23358160
[PubMed - in process]
Free PMC Article
7.

A bimodular mechanism of calcium control in eukaryotes.

Tidow H, Poulsen LR, Andreeva A, Knudsen M, Hein KL, Wiuf C, Palmgren MG, Nissen P.

Nature. 2012 Nov 15;491(7424):468-72. doi: 10.1038/nature11539. Epub 2012 Oct 21.

PMID:
23086147
[PubMed - indexed for MEDLINE]
8.

Variable elimination in post-translational modification reaction networks with mass-action kinetics.

Feliu E, Wiuf C.

J Math Biol. 2013 Jan;66(1-2):281-310. doi: 10.1007/s00285-012-0510-4. Epub 2012 Feb 5.

PMID:
22311196
[PubMed - indexed for MEDLINE]
9.

Exact analysis of intrinsic qualitative features of phosphorelays using mathematical models.

Knudsen M, Feliu E, Wiuf C.

J Theor Biol. 2012 May 7;300:7-18. doi: 10.1016/j.jtbi.2012.01.007. Epub 2012 Jan 13.

PMID:
22266661
[PubMed - indexed for MEDLINE]
10.

Signaling cascades: consequences of varying substrate and phosphatase levels.

Feliu E, Knudsen M, Wiuf C.

Adv Exp Med Biol. 2012;736:81-94. doi: 10.1007/978-1-4419-7210-1_4.

PMID:
22161323
[PubMed - indexed for MEDLINE]
11.

Monitoring endangered freshwater biodiversity using environmental DNA.

Thomsen PF, Kielgast J, Iversen LL, Wiuf C, Rasmussen M, Gilbert MT, Orlando L, Willerslev E.

Mol Ecol. 2012 Jun;21(11):2565-73. doi: 10.1111/j.1365-294X.2011.05418.x. Epub 2011 Dec 13.

PMID:
22151771
[PubMed - indexed for MEDLINE]
12.

Modelling the contribution of family history and variation in single nucleotide polymorphisms to risk of schizophrenia: a Danish national birth cohort-based study.

Agerbo E, Mortensen PB, Wiuf C, Pedersen MS, McGrath J, Hollegaard MV, Nørgaard-Pedersen B, Hougaard DM, Mors O, Pedersen CB.

Schizophr Res. 2012 Feb;134(2-3):246-52. doi: 10.1016/j.schres.2011.10.025. Epub 2011 Nov 22.

PMID:
22108675
[PubMed - indexed for MEDLINE]
13.

Enzyme-sharing as a cause of multi-stationarity in signalling systems.

Feliu E, Wiuf C.

J R Soc Interface. 2012 Jun 7;9(71):1224-32. doi: 10.1098/rsif.2011.0664. Epub 2011 Nov 2.

PMID:
22048944
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis.

Thorsen K, Schepeler T, Øster B, Rasmussen MH, Vang S, Wang K, Hansen KQ, Lamy P, Pedersen JS, Eller A, Mansilla F, Laurila K, Wiuf C, Laurberg S, Dyrskjøt L, Ørntoft TF, Andersen CL.

BMC Genomics. 2011 Oct 14;12:505. doi: 10.1186/1471-2164-12-505.

PMID:
21999571
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Gene expression classifier predicts for hypoxic modification of radiotherapy with nimorazole in squamous cell carcinomas of the head and neck.

Toustrup K, Sørensen BS, Lassen P, Wiuf C, Alsner J, Overgaard J; Danish Head and Neck Cancer Group (DAHANCA).

Radiother Oncol. 2012 Jan;102(1):122-9. doi: 10.1016/j.radonc.2011.09.010. Epub 2011 Oct 11.

PMID:
21996521
[PubMed - indexed for MEDLINE]
16.

Development of a hypoxia gene expression classifier with predictive impact for hypoxic modification of radiotherapy in head and neck cancer.

Toustrup K, Sørensen BS, Nordsmark M, Busk M, Wiuf C, Alsner J, Overgaard J.

Cancer Res. 2011 Sep 1;71(17):5923-31. doi: 10.1158/0008-5472.CAN-11-1182. Epub 2011 Aug 16.

PMID:
21846821
[PubMed - indexed for MEDLINE]
Free Article
17.

Common variants at VRK2 and TCF4 conferring risk of schizophrenia.

Steinberg S, de Jong S; Irish Schizophrenia Genomics Consortium, Andreassen OA, Werge T, Børglum AD, Mors O, Mortensen PB, Gustafsson O, Costas J, Pietiläinen OP, Demontis D, Papiol S, Huttenlocher J, Mattheisen M, Breuer R, Vassos E, Giegling I, Fraser G, Walker N, Tuulio-Henriksson A, Suvisaari J, Lönnqvist J, Paunio T, Agartz I, Melle I, Djurovic S, Strengman E; GROUP, Jürgens G, Glenthøj B, Terenius L, Hougaard DM, Ørntoft T, Wiuf C, Didriksen M, Hollegaard MV, Nordentoft M, van Winkel R, Kenis G, Abramova L, Kaleda V, Arrojo M, Sanjuán J, Arango C, Sperling S, Rossner M, Ribolsi M, Magni V, Siracusano A, Christiansen C, Kiemeney LA, Veldink J, van den Berg L, Ingason A, Muglia P, Murray R, Nöthen MM, Sigurdsson E, Petursson H, Thorsteinsdottir U, Kong A, Rubino IA, De Hert M, Réthelyi JM, Bitter I, Jönsson EG, Golimbet V, Carracedo A, Ehrenreich H, Craddock N, Owen MJ, O'Donovan MC; Wellcome Trust Case Control Consortium 2, Ruggeri M, Tosato S, Peltonen L, Ophoff RA, Collier DA, St Clair D, Rietschel M, Cichon S, Stefansson H, Rujescu D, Stefansson K.

Hum Mol Genet. 2011 Oct 15;20(20):4076-81. doi: 10.1093/hmg/ddr325. Epub 2011 Jul 26.

PMID:
21791550
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comprehensive genome methylation analysis in bladder cancer: identification and validation of novel methylated genes and application of these as urinary tumor markers.

Reinert T, Modin C, Castano FM, Lamy P, Wojdacz TK, Hansen LL, Wiuf C, Borre M, Dyrskjøt L, Orntoft TF.

Clin Cancer Res. 2011 Sep 1;17(17):5582-92. doi: 10.1158/1078-0432.CCR-10-2659. Epub 2011 Jul 25.

PMID:
21788354
[PubMed - indexed for MEDLINE]
Free Article
19.

A review of software for microarray genotyping.

Lamy P, Grove J, Wiuf C.

Hum Genomics. 2011 May;5(4):304-9. Review.

PMID:
21712191
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

An Algebro-topological description of protein domain structure.

Penner RC, Knudsen M, Wiuf C, Andersen JE.

PLoS One. 2011;6(5):e19670. doi: 10.1371/journal.pone.0019670. Epub 2011 May 24.

PMID:
21629687
[PubMed - indexed for MEDLINE]
Free PMC Article

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