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Items: 1 to 20 of 110

1.

Pathway Graphical Lasso.

Grechkin M, Fazel M, Witten D, Lee SI.

Proc Conf AAAI Artif Intell. 2015 Jan;2015:2617-2623.

2.

The cluster graphical lasso for improved estimation of Gaussian graphical models.

Tan KM, Witten D, Shojaie A.

Comput Stat Data Anal. 2015 May;85:23-36.

3.

Learning Graphical Models With Hubs.

Tan KM, London P, Mohan K, Lee SI, Fazel M, Witten D.

J Mach Learn Res. 2014 Oct;15:3297-3331.

4.

Detection of an endogenous urinary biomarker associated with CYP2D6 activity using global metabolomics.

Tay-Sontheimer J, Shireman LM, Beyer RP, Senn T, Witten D, Pearce RE, Gaedigk A, Gana Fomban CL, Lutz JD, Isoherranen N, Thummel KE, Fiehn O, Leeder JS, Lin YS.

Pharmacogenomics. 2014 Dec;15(16):1947-62. doi: 10.2217/pgs.14.155. Erratum in: Pharmacogenomics. 2015 Jan;16(2):174.

PMID:
25521354
5.

Sparse Biclustering of Transposable Data.

Tan KM, Witten DM.

J Comput Graph Stat. 2014;23(4):985-1008.

PMID:
25364221
6.

Node-Based Learning of Multiple Gaussian Graphical Models.

Mohan K, London P, Fazel M, Witten D, Lee SI.

J Mach Learn Res. 2014 Jan 1;15(1):445-488.

7.

Graph Estimation with Joint Additive Models.

Voorman A, Shojaie A, Witten D.

Biometrika. 2014 Mar 1;101(1):85-101.

8.

Inferring clonal composition from multiple sections of a breast cancer.

Zare H, Wang J, Hu A, Weber K, Smith J, Nickerson D, Song C, Witten D, Blau CA, Noble WS.

PLoS Comput Biol. 2014 Jul 10;10(7):e1003703. doi: 10.1371/journal.pcbi.1003703. eCollection 2014 Jul.

9.

The joint graphical lasso for inverse covariance estimation across multiple classes.

Danaher P, Wang P, Witten DM.

J R Stat Soc Series B Stat Methodol. 2014 Mar;76(2):373-397.

10.

The Cluster Elastic Net for High-Dimensional Regression With Unknown Variable Grouping.

Witten DM, Shojaie A, Zhang F.

Technometrics. 2014 Feb 20;56(1):112-122.

11.

A general framework for estimating the relative pathogenicity of human genetic variants.

Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.

Nat Genet. 2014 Mar;46(3):310-5. doi: 10.1038/ng.2892. Epub 2014 Feb 2.

12.

Is GATA3 expression maintained in regional metastases?: a study of paired primary and metastatic urothelial carcinomas.

Zhao L, Antic T, Witten D, Paner GP, Taxy JB, Husain A, Gwin K, Mirza MK, Lingen MW, Tretiakova MS.

Am J Surg Pathol. 2013 Dec;37(12):1876-81. doi: 10.1097/PAS.0b013e31829e2525.

PMID:
24121175
13.

Penalized unsupervised learning with outliers.

Witten DM.

Stat Interface. 2013;6(2):211-221.

14.

Scientific research in the age of omics: the good, the bad, and the sloppy.

Witten DM, Tibshirani R.

J Am Med Inform Assoc. 2013 Jan 1;20(1):125-7. doi: 10.1136/amiajnl-2012-000972. Epub 2012 Oct 4.

15.

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers.

Brunner AL, Beck AH, Edris B, Sweeney RT, Zhu SX, Li R, Montgomery K, Varma S, Gilks T, Guo X, Foley JW, Witten DM, Giacomini CP, Flynn RA, Pollack JR, Tibshirani R, Chang HY, van de Rijn M, West RB.

Genome Biol. 2012 Aug 28;13(8):R75. doi: 10.1186/gb-2012-13-8-r75.

16.

The benefits of implant removal from the foot and ankle.

Williams AA, Witten DM, Duester R, Chou LB.

J Bone Joint Surg Am. 2012 Jul 18;94(14):1316-20. doi: 10.2106/JBJS.J.01756.

PMID:
22810403
17.

Molecular signatures from omics data: from chaos to consensus.

Sung J, Wang Y, Chandrasekaran S, Witten DM, Price ND.

Biotechnol J. 2012 Aug;7(8):946-57. doi: 10.1002/biot.201100305. Epub 2012 Apr 23. Review.

18.

The Stanford Integrated Psychosocial Assessment for Transplantation (SIPAT): a new tool for the psychosocial evaluation of pre-transplant candidates.

Maldonado JR, Dubois HC, David EE, Sher Y, Lolak S, Dyal J, Witten D.

Psychosomatics. 2012 Mar-Apr;53(2):123-32. doi: 10.1016/j.psym.2011.12.012.

PMID:
22424160
19.

Massively parallel functional dissection of mammalian enhancers in vivo.

Patwardhan RP, Hiatt JB, Witten DM, Kim MJ, Smith RP, May D, Lee C, Andrie JM, Lee SI, Cooper GM, Ahituv N, Pennacchio LA, Shendure J.

Nat Biotechnol. 2012 Feb 26;30(3):265-70. doi: 10.1038/nbt.2136.

20.

Penalized classification using Fisher's linear discriminant.

Witten DM, Tibshirani R.

J R Stat Soc Series B Stat Methodol. 2011 Nov;73(5):753-772.

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