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Results: 1 to 20 of 106

1.

Evolution. Systematic humanization of yeast genes reveals conserved functions and genetic modularity.

Kachroo AH, Laurent JM, Yellman CM, Meyer AG, Wilke CO, Marcotte EM.

Science. 2015 May 22;348(6237):921-5. doi: 10.1126/science.aaa0769.

PMID:
25999509
2.

Relationship between protein thermodynamic constraints and variation of evolutionary rates among sites.

Echave J, Jackson EL, Wilke CO.

Phys Biol. 2015 Mar 19;12(2):025002. doi: 10.1088/1478-3975/12/2/025002.

PMID:
25787027
3.

Comprehensive, structurally-informed alignment and phylogeny of vertebrate biogenic amine receptors.

Spielman SJ, Kumar K, Wilke CO.

PeerJ. 2015 Feb 17;3:e773. doi: 10.7717/peerj.773. eCollection 2015.

4.

The relationship between dN/dS and scaled selection coefficients.

Spielman SJ, Wilke CO.

Mol Biol Evol. 2015 Apr;32(4):1097-108. doi: 10.1093/molbev/msv003. Epub 2015 Jan 8.

PMID:
25576365
5.

Predicting growth conditions from internal metabolic fluxes in an in-silico model of E. coli.

Sridhara V, Meyer AG, Rai P, Barrick JE, Ravikumar P, Segrè D, Wilke CO.

PLoS One. 2014 Dec 12;9(12):e114608. doi: 10.1371/journal.pone.0114608. eCollection 2014.

6.

Predicting evolutionary site variability from structure in viral proteins: buriedness, packing, flexibility, and design.

Shahmoradi A, Sydykova DK, Spielman SJ, Jackson EL, Dawson ET, Meyer AG, Wilke CO.

J Mol Evol. 2014 Oct;79(3-4):130-42. doi: 10.1007/s00239-014-9644-x. Epub 2014 Sep 13.

PMID:
25217382
7.

Limited utility of residue masking for positive-selection inference.

Spielman SJ, Dawson ET, Wilke CO.

Mol Biol Evol. 2014 Sep;31(9):2496-500. doi: 10.1093/molbev/msu183. Epub 2014 Jun 3.

PMID:
24899665
8.

Long-term control of viral replication in a Group O, human immunodeficiency virus type 1-infected individual.

Buckheit RW 3rd, Sexauer SB, Sedaghat AR, Wilke CO, Laeyendecker O, Basseth CR, Blankson JN.

AIDS Res Hum Retroviruses. 2014 Jun;30(6):511-3. doi: 10.1089/AID.2014.0054. No abstract available.

PMID:
24798496
9.

Analyzing machupo virus-receptor binding by molecular dynamics simulations.

Meyer AG, Sawyer SL, Ellington AD, Wilke CO.

PeerJ. 2014 Feb 27;2:e266. doi: 10.7717/peerj.266. eCollection 2014.

10.

Fitting outbreak models to data from many small norovirus outbreaks.

O'Dea EB, Pepin KM, Lopman BA, Wilke CO.

Epidemics. 2014 Mar;6:18-29. doi: 10.1016/j.epidem.2013.12.002. Epub 2014 Jan 8.

11.

Socioeconomic disparities in the presentation of acute bacterial sinusitis complications in children.

Sedaghat AR, Wilke CO, Cunningham MJ, Ishman SL.

Laryngoscope. 2014 Jul;124(7):1700-6. doi: 10.1002/lary.24492. Epub 2013 Dec 11.

PMID:
24338779
12.

Maximum allowed solvent accessibilites of residues in proteins.

Tien MZ, Meyer AG, Sydykova DK, Spielman SJ, Wilke CO.

PLoS One. 2013 Nov 21;8(11):e80635. doi: 10.1371/journal.pone.0080635. eCollection 2013.

13.

Amino-acid site variability among natural and designed proteins.

Jackson EL, Ollikainen N, Covert AW 3rd, Kortemme T, Wilke CO.

PeerJ. 2013 Nov 12;1:e211. doi: 10.7717/peerj.211. eCollection 2013.

14.

Experiments on the role of deleterious mutations as stepping stones in adaptive evolution.

Covert AW 3rd, Lenski RE, Wilke CO, Ofria C.

Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):E3171-8. doi: 10.1073/pnas.1313424110. Epub 2013 Aug 5.

15.

RNaseIII and T4 polynucleotide Kinase sequence biases and solutions during RNA-seq library construction.

Lee C, Harris RA, Wall JK, Mayfield RD, Wilke CO.

Biol Direct. 2013 Jul 4;8:16. doi: 10.1186/1745-6150-8-16.

16.

PeptideBuilder: A simple Python library to generate model peptides.

Tien MZ, Sydykova DK, Meyer AG, Wilke CO.

PeerJ. 2013 May 21;1:e80. doi: 10.7717/peerj.80. Print 2013.

17.

Sinonasal anatomic variants and asthma are associated with faster development of chronic rhinosinusitis in patients with allergic rhinitis.

Sedaghat AR, Gray ST, Chambers KJ, Wilke CO, Caradonna DS.

Int Forum Allergy Rhinol. 2013 Sep;3(9):755-61. doi: 10.1002/alr.21163. Epub 2013 Mar 15.

PMID:
23504927
18.

Congruent evolution of fitness and genetic robustness in vesicular stomatitis virus.

Novella IS, Presloid JB, Beech C, Wilke CO.

J Virol. 2013 May;87(9):4923-8. doi: 10.1128/JVI.02796-12. Epub 2013 Feb 13.

19.

Cross-species comparison of site-specific evolutionary-rate variation in influenza haemagglutinin.

Meyer AG, Dawson ET, Wilke CO.

Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120334. doi: 10.1098/rstb.2012.0334. Print 2013 Mar 19.

20.

Membrane environment imposes unique selection pressures on transmembrane domains of G protein-coupled receptors.

Spielman SJ, Wilke CO.

J Mol Evol. 2013 Mar;76(3):172-82. doi: 10.1007/s00239-012-9538-8. Epub 2013 Jan 26. Erratum in: J Mol Evol. 2013 Mar;76(3):183.

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