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INSECT PHYLOGENOMICS. Response to Comment on "Phylogenomics resolves the timing and pattern of insect evolution".

Kjer KM, Ware JL, Rust J, Wappler T, Lanfear R, Jermiin LS, Zhou X, Aspöck H, Aspöck U, Beutel RG, Blanke A, Donath A, Flouri T, Frandsen PB, Kapli P, Kawahara AY, Letsch H, Mayer C, McKenna DD, Meusemann K, Niehuis O, Peters RS, Wiegmann BM, Yeates DK, von Reumont BM, Stamatakis A, Misof B.

Science. 2015 Jul 31;349(6247):487. doi: 10.1126/science.aaa7136.


Say goodbye to tribes in the new house fly classification: A new molecular phylogenetic analysis and an updated biogeographical narrative for the Muscidae (Diptera).

Haseyama KL, Wiegmann BM, Almeida EA, de Carvalho CJ.

Mol Phylogenet Evol. 2015 Aug;89:1-12. doi: 10.1016/j.ympev.2015.04.006. Epub 2015 Apr 11.


Phylogenomics resolves the timing and pattern of insect evolution.

Misof B, Liu S, Meusemann K, Peters RS, Donath A, Mayer C, Frandsen PB, Ware J, Flouri T, Beutel RG, Niehuis O, Petersen M, Izquierdo-Carrasco F, Wappler T, Rust J, Aberer AJ, Aspöck U, Aspöck H, Bartel D, Blanke A, Berger S, Böhm A, Buckley TR, Calcott B, Chen J, Friedrich F, Fukui M, Fujita M, Greve C, Grobe P, Gu S, Huang Y, Jermiin LS, Kawahara AY, Krogmann L, Kubiak M, Lanfear R, Letsch H, Li Y, Li Z, Li J, Lu H, Machida R, Mashimo Y, Kapli P, McKenna DD, Meng G, Nakagaki Y, Navarrete-Heredia JL, Ott M, Ou Y, Pass G, Podsiadlowski L, Pohl H, von Reumont BM, Schütte K, Sekiya K, Shimizu S, Slipinski A, Stamatakis A, Song W, Su X, Szucsich NU, Tan M, Tan X, Tang M, Tang J, Timelthaler G, Tomizuka S, Trautwein M, Tong X, Uchifune T, Walzl MG, Wiegmann BM, Wilbrandt J, Wipfler B, Wong TK, Wu Q, Wu G, Xie Y, Yang S, Yang Q, Yeates DK, Yoshizawa K, Zhang Q, Zhang R, Zhang W, Zhang Y, Zhao J, Zhou C, Zhou L, Ziesmann T, Zou S, Li Y, Xu X, Zhang Y, Yang H, Wang J, Wang J, Kjer KM, Zhou X.

Science. 2014 Nov 7;346(6210):763-7. doi: 10.1126/science.1257570. Epub 2014 Nov 6.


The evolution and biogeography of the austral horse fly tribe Scionini (Diptera: Tabanidae: Pangoniinae) inferred from multiple mitochondrial and nuclear genes.

Lessard BD, Cameron SL, Bayless KM, Wiegmann BM, Yeates DK.

Mol Phylogenet Evol. 2013 Sep;68(3):516-40. doi: 10.1016/j.ympev.2013.04.030. Epub 2013 May 9.


Advances in insect phylogeny at the dawn of the postgenomic era.

Trautwein MD, Wiegmann BM, Beutel R, Kjer KM, Yeates DK.

Annu Rev Entomol. 2012;57:449-68. doi: 10.1146/annurev-ento-120710-100538. Review.


Overcoming the effects of rogue taxa: Evolutionary relationships of the bee flies.

Trautwein MD, Wiegmann BM, Yeates DK.

PLoS Curr. 2011 May 5;3:RRN1233. doi: 10.1371/currents.RRN1233.


Episodic radiations in the fly tree of life.

Wiegmann BM, Trautwein MD, Winkler IS, Barr NB, Kim JW, Lambkin C, Bertone MA, Cassel BK, Bayless KM, Heimberg AM, Wheeler BM, Peterson KJ, Pape T, Sinclair BJ, Skevington JH, Blagoderov V, Caravas J, Kutty SN, Schmidt-Ott U, Kampmeier GE, Thompson FC, Grimaldi DA, Beckenbach AT, Courtney GW, Friedrich M, Meier R, Yeates DK.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5690-5. doi: 10.1073/pnas.1012675108. Epub 2011 Mar 14.


A multigene phylogeny of the fly superfamily Asiloidea (Insecta): Taxon sampling and additional genes reveal the sister-group to all higher flies (Cyclorrhapha).

Trautwein MD, Wiegmann BM, Yeates DK.

Mol Phylogenet Evol. 2010 Sep;56(3):918-30. doi: 10.1016/j.ympev.2010.04.017. Epub 2010 Apr 23.


Phylogenetic analysis and temporal diversification of mosquitoes (Diptera: Culicidae) based on nuclear genes and morphology.

Reidenbach KR, Cook S, Bertone MA, Harbach RE, Wiegmann BM, Besansky NJ.

BMC Evol Biol. 2009 Dec 22;9:298. doi: 10.1186/1471-2148-9-298.


Single-copy nuclear genes resolve the phylogeny of the holometabolous insects.

Wiegmann BM, Trautwein MD, Kim JW, Cassel BK, Bertone MA, Winterton SL, Yeates DK.

BMC Biol. 2009 Jun 24;7:34. doi: 10.1186/1741-7007-7-34.


The Muscoidea (Diptera: Calyptratae) are paraphyletic: Evidence from four mitochondrial and four nuclear genes.

Kutty SN, Pape T, Pont A, Wiegmann BM, Meier R.

Mol Phylogenet Evol. 2008 Nov;49(2):639-52. doi: 10.1016/j.ympev.2008.08.012. Epub 2008 Aug 29.


Molecular evolution of PISTILLATA-like genes in the dogwood genus Cornus (Cornaceae).

Zhang W, Xiang QY, Thomas DT, Wiegmann BM, Frohlich MW, Soltis DE.

Mol Phylogenet Evol. 2008 Apr;47(1):175-95. doi: 10.1016/j.ympev.2007.12.022. Epub 2008 Jan 1.


The phylogeny and evolution of host choice in the Hippoboscoidea (Diptera) as reconstructed using four molecular markers.

Petersen FT, Meier R, Kutty SN, Wiegmann BM.

Mol Phylogenet Evol. 2007 Oct;45(1):111-22. Epub 2007 May 18.


The phylogenetic relationships of flies in the superfamily Empidoidea (Insecta: Diptera).

Moulton JK, Wiegmann BM.

Mol Phylogenet Evol. 2007 Jun;43(3):701-13. Epub 2007 Mar 13.


Phylogenetic relationships within the leaf-mining flies (Diptera: Agromyzidae) inferred from sequence data from multiple genes.

Scheffer SJ, Winkler IS, Wiegmann BM.

Mol Phylogenet Evol. 2007 Mar;42(3):756-75. Epub 2006 Dec 31.


Phylogeny and Bayesian divergence time estimations of small-headed flies (Diptera: Acroceridae) using multiple molecular markers.

Winterton SL, Wiegmann BM, Schlinger EI.

Mol Phylogenet Evol. 2007 Jun;43(3):808-32. Epub 2006 Aug 24.


Evolutionary patterns in the antR-Cor gene in the dwarf dogwood complex (Cornus, Cornaceae).

Fan C, Xiang QY, Remington DL, Purugganan MD, Wiegmann BM.

Genetica. 2007 May;130(1):19-34. Epub 2006 Aug 19.


Heterogeneous evolution of the Myc-like Anthocyanin regulatory gene and its phylogenetic utility in Cornus L. (Cornaceae).

Fan C, Purugganan MD, Thomas DT, Wiegmann BM, Xiang JQ.

Mol Phylogenet Evol. 2004 Dec;33(3):580-94.

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