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Results: 1 to 20 of 49

1.

Nucleotides adjacent to the ligand-binding pocket are linked to activity tuning in the purine riboswitch.

Stoddard CD, Widmann J, Trausch JJ, Marcano-Velázquez JG, Knight R, Batey RT.

J Mol Biol. 2013 May 27;425(10):1596-611. doi: 10.1016/j.jmb.2013.02.023. Epub 2013 Feb 26.

PMID:
23485418
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

RNASTAR: an RNA STructural Alignment Repository that provides insight into the evolution of natural and artificial RNAs.

Widmann J, Stombaugh J, McDonald D, Chocholousova J, Gardner P, Iyer MK, Liu Z, Lozupone CA, Quinn J, Smit S, Wikman S, Zaneveld JR, Knight R.

RNA. 2012 Jul;18(7):1319-27. doi: 10.1261/rna.032052.111. Epub 2012 May 29.

PMID:
22645380
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Interactive versus reproductive learning, a comparison of medical school graduates with participants of a postgraduate CPD session.

Löffler S, Feja C, Widmann J, Claus I, von Lindeman K, Eisnach K.

GMS Z Med Ausbild. 2011;28(4):Doc57. doi: 10.3205/zma000769. Epub 2011 Nov 15. English, German.

PMID:
22205915
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Human Immunodeficiency Virus nef signature sequences are associated with pulmonary hypertension.

Almodovar S, Knight R, Allshouse AA, Roemer S, Lozupone C, McDonald D, Widmann J, Voelkel NF, Shelton RJ, Suarez EB, Hammer KW, Goujard C, Petrosillo N, Simonneau G, Hsue PY, Humbert M, Flores SC.

AIDS Res Hum Retroviruses. 2012 Jun;28(6):607-18. doi: 10.1089/AID.2011.0021. Epub 2012 Jan 17.

PMID:
22066947
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Mesenteric panniculitis presenting with acute non-occlusive colonic ischemia.

Amor F, Farsad M, Polato R, Pernter P, Widmann J, Mazzoleni G, Osele L, Wiedermann CJ.

Int Arch Med. 2011 Jun 22;4:22. doi: 10.1186/1755-7682-4-22.

PMID:
21696596
[PubMed]
Free PMC Article
6.

Boulder ALignment Editor (ALE): a web-based RNA alignment tool.

Stombaugh J, Widmann J, McDonald D, Knight R.

Bioinformatics. 2011 Jun 15;27(12):1706-7. doi: 10.1093/bioinformatics/btr258. Epub 2011 May 5.

PMID:
21546392
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Nucleotides that are essential but not conserved; a sufficient L-tryptophan site in RNA.

Majerfeld I, Chocholousova J, Malaiya V, Widmann J, McDonald D, Reeder J, Iyer M, Illangasekare M, Yarus M, Knight R.

RNA. 2010 Oct;16(10):1915-24. doi: 10.1261/rna.2220210. Epub 2010 Aug 10.

PMID:
20699302
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Stable tRNA-based phylogenies using only 76 nucleotides.

Widmann J, Harris JK, Lozupone C, Wolfson A, Knight R.

RNA. 2010 Aug;16(8):1469-77. doi: 10.1261/rna.726010. Epub 2010 Jun 17.

PMID:
20558546
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

QIIME allows analysis of high-throughput community sequencing data.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R.

Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. No abstract available.

PMID:
20383131
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Simple, recurring RNA binding sites for L-arginine.

Janas T, Widmann JJ, Knight R, Yarus M.

RNA. 2010 Apr;16(4):805-16. doi: 10.1261/rna.1979410. Epub 2010 Mar 1.

PMID:
20194519
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Patient risk factors and adverse drug interactions in the treatment of acute gouty arthritis in the elderly: a case report.

Zagler B, Kaneppele A, Pattis P, Stockner I, Sitzmann G, Widmann J, Pernthaler H, Wiedermann CJ.

Cases J. 2009 Apr 28;2:6602. doi: 10.1186/1757-1626-2-6602.

PMID:
19829828
[PubMed]
Free PMC Article
12.

RNA-amino acid binding: a stereochemical era for the genetic code.

Yarus M, Widmann JJ, Knight R.

J Mol Evol. 2009 Nov;69(5):406-29. doi: 10.1007/s00239-009-9270-1. Epub 2009 Oct 1. Review.

PMID:
19795157
[PubMed - indexed for MEDLINE]
13.

MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs.

Hamady M, Widmann J, Copley SD, Knight R.

Genome Biol. 2008;9(8):R128. doi: 10.1186/gb-2008-9-8-r128. Epub 2008 Aug 15.

PMID:
18706079
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

PyCogent: a toolkit for making sense from sequence.

Knight R, Maxwell P, Birmingham A, Carnes J, Caporaso JG, Easton BC, Eaton M, Hamady M, Lindsay H, Liu Z, Lozupone C, McDonald D, Robeson M, Sammut R, Smit S, Wakefield MJ, Widmann J, Wikman S, Wilson S, Ying H, Huttley GA.

Genome Biol. 2007;8(8):R171.

PMID:
17708774
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evolutionary rates vary among rRNA structural elements.

Smit S, Widmann J, Knight R.

Nucleic Acids Res. 2007;35(10):3339-54. Epub 2007 Apr 27.

PMID:
17468501
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

DivergentSet, a tool for picking non-redundant sequences from large sequence collections.

Widmann J, Hamady M, Knight R.

Mol Cell Proteomics. 2006 Aug;5(8):1520-32. Epub 2006 Jun 11.

PMID:
16769708
[PubMed - indexed for MEDLINE]
Free Article
17.

tRNA creation by hairpin duplication.

Widmann J, Di Giulio M, Yarus M, Knight R.

J Mol Evol. 2005 Oct;61(4):524-30. Epub 2005 Sep 12.

PMID:
16155749
[PubMed - indexed for MEDLINE]
18.

Tensor fasciae latae perforator flap for reconstruction of composite Achilles tendon defects with skin and vascularized fascia.

Deiler S, Pfadenhauer A, Widmann J, Stützle H, Kanz KG, Stock W.

Plast Reconstr Surg. 2000 Aug;106(2):342-9.

PMID:
10946933
[PubMed - indexed for MEDLINE]
19.

Checking for breathing: evaluation of the diagnostic capability of emergency medical services personnel, physicians, medical students, and medical laypersons.

Ruppert M, Reith MW, Widmann JH, Lackner CK, Kerkmann R, Schweiberer L, Peter K.

Ann Emerg Med. 1999 Dec;34(6):720-9.

PMID:
10577401
[PubMed - indexed for MEDLINE]
20.

Studies of portal hemodynamics and hepatic oxygen consumption during acute liver allograft rejection.

Gadano A, Durand F, Degott C, Dosquet C, Moreau R, Hadengue A, Widmann JJ, Vachiery F, Elman A, Sogni P, Yang S, Valla D, Bernuau J, Belghiti J, Erlinger S, Lebrec D.

Transplantation. 1997 Oct 27;64(8):1188-92.

PMID:
9355838
[PubMed - indexed for MEDLINE]

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