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Items: 1 to 20 of 34

1.

Can the Bacterial Community of a High Arctic Glacier Surface Escape Viral Control?

Rassner SM, Anesio AM, Girdwood SE, Hell K, Gokul JK, Whitworth DE, Edwards A.

Front Microbiol. 2016 Jun 21;7:956. doi: 10.3389/fmicb.2016.00956. eCollection 2016.

2.

MetaPred2CS: a sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins.

Kara A, Vickers M, Swain M, Whitworth DE, Fernandez-Fuentes N.

Bioinformatics. 2016 Jul 4. pii: btw403. [Epub ahead of print]

PMID:
27378293
3.

Recasting a traditional laboratory practical as a "Design-your-own protocol" to teach a universal research skill.

Whitworth DE.

Biochem Mol Biol Educ. 2016 Jul 8;44(4):377-80. doi: 10.1002/bmb.20948. Epub 2016 Feb 11.

PMID:
26864650
4.

Synergism Between Bacterial GAPDH and OMVs: Disparate Mechanisms but Co-Operative Action.

Whitworth DE, Morgan BH.

Front Microbiol. 2015 Nov 9;6:1231. doi: 10.3389/fmicb.2015.01231. eCollection 2015. No abstract available.

5.

An off-the-shelf, authentic, and versatile undergraduate molecular biology practical course.

Whitworth DE.

Biochem Mol Biol Educ. 2015 Nov-Dec;43(6):434-40. doi: 10.1002/bmb.20893. Epub 2015 Oct 30.

PMID:
26515713
6.

Genome-wide analysis of myxobacterial two-component systems: genome relatedness and evolutionary changes.

Whitworth DE.

BMC Genomics. 2015 Oct 13;16:780. doi: 10.1186/s12864-015-2018-y.

7.

Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor.

Kara A, Vickers M, Swain M, Whitworth DE, Fernandez-Fuentes N.

BMC Bioinformatics. 2015 Sep 18;16:297. doi: 10.1186/s12859-015-0741-7.

8.

Composition of distinct sub-proteomes in Myxococcus xanthus: metabolic cost and amino acid availability.

Whitworth DE, Slade SE, Mironas A.

Amino Acids. 2015 Dec;47(12):2521-31. doi: 10.1007/s00726-015-2042-x. Epub 2015 Jul 11.

PMID:
26162436
9.

P2CS: updates of the prokaryotic two-component systems database.

Ortet P, Whitworth DE, Santaella C, Achouak W, Barakat M.

Nucleic Acids Res. 2015 Jan;43(Database issue):D536-41. doi: 10.1093/nar/gku968. Epub 2014 Oct 16.

10.

The fist bump: a more hygienic alternative to the handshake.

Mela S, Whitworth DE.

Am J Infect Control. 2014 Aug;42(8):916-7. doi: 10.1016/j.ajic.2014.04.011.

PMID:
25087144
11.

P2RP: a Web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes.

Barakat M, Ortet P, Whitworth DE.

BMC Genomics. 2013 Apr 20;14:269. doi: 10.1186/1471-2164-14-269.

12.

P2TF: a comprehensive resource for analysis of prokaryotic transcription factors.

Ortet P, De Luca G, Whitworth DE, Barakat M.

BMC Genomics. 2012 Nov 15;13:628. doi: 10.1186/1471-2164-13-628.

13.

Predatory activity of Myxococcus xanthus outer-membrane vesicles and properties of their hydrolase cargo.

Evans AG, Davey HM, Cookson A, Currinn H, Cooke-Fox G, Stanczyk PJ, Whitworth DE.

Microbiology. 2012 Nov;158(Pt 11):2742-52. doi: 10.1099/mic.0.060343-0. Epub 2012 Sep 13.

PMID:
22977088
14.

Myxobacterial vesicles death at a distance?

Whitworth DE.

Adv Appl Microbiol. 2011;75:1-31. doi: 10.1016/B978-0-12-387046-9.00001-3. Review.

PMID:
21807244
15.

The genetic organisation of prokaryotic two-component system signalling pathways.

Williams RH, Whitworth DE.

BMC Genomics. 2010 Dec 20;11:720. doi: 10.1186/1471-2164-11-720.

16.

P2CS: a database of prokaryotic two-component systems.

Barakat M, Ortet P, Whitworth DE.

Nucleic Acids Res. 2011 Jan;39(Database issue):D771-6. doi: 10.1093/nar/gkq1023. Epub 2010 Nov 4.

17.

Correlations between the role, sequence conservation, genomic location and severity of phenotype in myxobacterial developmental genes.

Evans AR, Whitworth DE.

FEMS Microbiol Lett. 2010 Nov;312(1):40-5. doi: 10.1111/j.1574-6968.2010.02092.x. Epub 2010 Aug 27.

18.

Spatial simulations of myxobacterial development.

Holmes AB, Kalvala S, Whitworth DE.

PLoS Comput Biol. 2010 Feb 26;6(2):e1000686. doi: 10.1371/journal.pcbi.1000686.

19.

Evolution of relative reading frame bias in unidirectional prokaryotic gene overlaps.

Cock PJ, Whitworth DE.

Mol Biol Evol. 2010 Apr;27(4):753-6. doi: 10.1093/molbev/msp302. Epub 2009 Dec 14. Erratum in: Mol Biol Evol. 2010 Nov;27(11):2665.

20.

P2CS: a two-component system resource for prokaryotic signal transduction research.

Barakat M, Ortet P, Jourlin-Castelli C, Ansaldi M, Méjean V, Whitworth DE.

BMC Genomics. 2009 Jul 15;10:315. doi: 10.1186/1471-2164-10-315.

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