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Results: 1 to 20 of 153

1.

Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster.

Slattery M, Ma L, Spokony RF, Arthur RK, Kheradpour P, Kundaje A, Nègre N, Crofts A, Ptashkin R, Zieba J, Ostapenko A, Suchy S, Victorsen A, Jameel N, Grundstad AJ, Gao W, Moran JR, Rehm EJ, Grossman RL, Kellis M, White KP.

Genome Res. 2014 Jul;24(7):1224-35. doi: 10.1101/gr.168807.113.

PMID:
24985916
[PubMed - in process]
Free Article
2.

Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification.

Arthur RK, Ma L, Slattery M, Spokony RF, Ostapenko A, Nègre N, White KP.

Genome Res. 2014 Jul;24(7):1115-24. doi: 10.1101/gr.162008.113.

PMID:
24985914
[PubMed - in process]
Free Article
3.

The spectrum of somatic mutations in high-risk acute myeloid leukaemia with -7/del(7q).

McNerney ME, Brown CD, Peterson AL, Banerjee M, Larson RA, Anastasi J, Le Beau MM, White KP.

Br J Haematol. 2014 Jun 13. doi: 10.1111/bjh.12964. [Epub ahead of print]

PMID:
24931631
[PubMed - as supplied by publisher]
4.

Low grade prostate cancer diverges early from high grade and metastatic disease.

VanderWeele DJ, Brown CD, Taxy JB, Gillard M, Hatcher DM, Tom WR, Stadler WM, White KP.

Cancer Sci. 2014 May 31. doi: 10.1111/cas.12460. [Epub ahead of print]

PMID:
24890684
[PubMed - as supplied by publisher]
5.

Djenkolism: case report and literature review.

Bunawan NC, Rastegar A, White KP, Wang NE.

Int Med Case Rep J. 2014 Apr 16;7:79-84. doi: 10.2147/IMCRJ.S58379. eCollection 2014.

PMID:
24790471
[PubMed]
Free PMC Article
6.

Defining functional DNA elements in the human genome.

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, Giddings MC, Gilbert DM, Gingeras TR, Green ED, Guigo R, Hubbard T, Kent J, Lieb JD, Myers RM, Pazin MJ, Ren B, Stamatoyannopoulos JA, Weng Z, White KP, Hardison RC.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6131-8. doi: 10.1073/pnas.1318948111. Epub 2014 Apr 21. Review.

PMID:
24753594
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Protein quantitative trait loci identify novel candidates modulating cellular response to chemotherapy.

Stark AL, Hause RJ Jr, Gorsic LK, Antao NN, Wong SS, Chung SH, Gill DF, Im HK, Myers JL, White KP, Jones RB, Dolan ME.

PLoS Genet. 2014 Apr 3;10(4):e1004192. doi: 10.1371/journal.pgen.1004192. eCollection 2014 Apr.

PMID:
24699359
[PubMed - in process]
Free PMC Article
8.

SPOP promotes tumorigenesis by acting as a key regulatory hub in kidney cancer.

Li G, Ci W, Karmakar S, Chen K, Dhar R, Fan Z, Guo Z, Zhang J, Ke Y, Wang L, Zhuang M, Hu S, Li X, Zhou L, Li X, Calabrese MF, Watson ER, Prasad SM, Rinker-Schaeffer C, Eggener SE, Stricker T, Tian Y, Schulman BA, Liu J, White KP.

Cancer Cell. 2014 Apr 14;25(4):455-68. doi: 10.1016/j.ccr.2014.02.007. Epub 2014 Mar 20.

PMID:
24656772
[PubMed - in process]
9.

Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets.

Heath AP, Greenway M, Powell R, Spring J, Suarez R, Hanley D, Bandlamudi C, McNerney ME, White KP, Grossman RL.

J Am Med Inform Assoc. 2014 Jan 24. doi: 10.1136/amiajnl-2013-002155. [Epub ahead of print]

PMID:
24464852
[PubMed - as supplied by publisher]
10.

Eruptive purpuric papules on the arms; a case of chemotherapy-induced inflammation of actinic keratoses and review of the literature.

Chambers CJ, Liu H, White CR, White KP, Sharon VR.

Dermatol Online J. 2014 Jan 15;20(1):21246.

PMID:
24456949
[PubMed - in process]
Free Article
11.

Next-generation sequencing of disseminated tumor cells.

Møller EK, Kumar P, Voet T, Peterson A, Van Loo P, Mathiesen RR, Fjelldal R, Grundstad J, Borgen E, Baumbusch LO, Naume B, Børresen-Dale AL, White KP, Nord S, Kristensen VN.

Front Oncol. 2013 Dec 31;3:320. doi: 10.3389/fonc.2013.00320. eCollection 2013.

PMID:
24427740
[PubMed]
Free PMC Article
12.

What is your diagnosis? Spiradenocarcinoma.

Sobanko JF, Vanderbeek GE, White KP, White CR Jr, Bar AA.

Cutis. 2013 Dec;92(6):285-7. No abstract available.

PMID:
24416743
[PubMed - in process]
13.

miR-9a minimizes the phenotypic impact of genomic diversity by buffering a transcription factor.

Cassidy JJ, Jha AR, Posadas DM, Giri R, Venken KJ, Ji J, Jiang H, Bellen HJ, White KP, Carthew RW.

Cell. 2013 Dec 19;155(7):1556-67. doi: 10.1016/j.cell.2013.10.057. Erratum in: Cell. 2014 Apr 24;157(3):753.

PMID:
24360277
[PubMed - indexed for MEDLINE]
14.

RNA-seq differential expression studies: more sequence or more replication?

Liu Y, Zhou J, White KP.

Bioinformatics. 2014 Feb 1;30(3):301-4. doi: 10.1093/bioinformatics/btt688. Epub 2013 Dec 6.

PMID:
24319002
[PubMed - indexed for MEDLINE]
15.

Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells.

Looney TJ, Zhang L, Chen CH, Lee JH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker SW, Fernandes CJ, Gaetz J, Foshay KM, Clift KL, Zhang Z, Li WQ, Vallender EJ, Wagner U, Qin JY, Michelini KJ, Bugarija B, Park D, Aryee E, Stricker T, Zhou J, White KP, Ren B, Schroth GP, Ecker JR, Xiang AP, Lahn BT.

Genome Res. 2014 Feb;24(2):267-80. doi: 10.1101/gr.143891.112. Epub 2013 Dec 5.

PMID:
24310002
[PubMed - indexed for MEDLINE]
16.

A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk.

Blair DR, Lyttle CS, Mortensen JM, Bearden CF, Jensen AB, Khiabanian H, Melamed R, Rabadan R, Bernstam EV, Brunak S, Jensen LJ, Nicolae D, Shah NH, Grossman RL, Cox NJ, White KP, Rzhetsky A.

Cell. 2013 Sep 26;155(1):70-80. doi: 10.1016/j.cell.2013.08.030.

PMID:
24074861
[PubMed - indexed for MEDLINE]
17.

Divergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning.

Slattery M, Voutev R, Ma L, Nègre N, White KP, Mann RS.

PLoS Genet. 2013;9(9):e1003753. doi: 10.1371/journal.pgen.1003753. Epub 2013 Sep 5.

PMID:
24039600
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization.

Menoret D, Santolini M, Fernandes I, Spokony R, Zanet J, Gonzalez I, Latapie Y, Ferrer P, Rouault H, White KP, Besse P, Hakim V, Aerts S, Payre F, Plaza S.

Genome Biol. 2013 Aug 23;14(8):R86. [Epub ahead of print]

PMID:
23972280
[PubMed - as supplied by publisher]
Free PMC Article
19.

Recombinant antibodies to histone post-translational modifications.

Hattori T, Taft JM, Swist KM, Luo H, Witt H, Slattery M, Koide A, Ruthenburg AJ, Krajewski K, Strahl BD, White KP, Farnham PJ, Zhao Y, Koide S.

Nat Methods. 2013 Oct;10(10):992-5. doi: 10.1038/nmeth.2605. Epub 2013 Aug 18.

PMID:
23955773
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Enhanced dissection of the regulatory genome.

Slattery M, White KP.

Nat Methods. 2013 Aug;10(8):710-2. doi: 10.1038/nmeth.2577. No abstract available.

PMID:
23900252
[PubMed - indexed for MEDLINE]

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