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Results: 1 to 20 of 52

1.

A meta-analysis of multiple matched copy number and transcriptomics data sets for inferring gene regulatory relationships.

Newton R, Wernisch L.

PLoS One. 2014 Aug 22;9(8):e105522. doi: 10.1371/journal.pone.0105522. eCollection 2014.

2.

Key regulators control distinct transcriptional programmes in blood progenitor and mast cells.

Calero-Nieto FJ, Ng FS, Wilson NK, Hannah R, Moignard V, Leal-Cervantes AI, Jimenez-Madrid I, Diamanti E, Wernisch L, Göttgens B.

EMBO J. 2014 Jun 2;33(11):1212-26. doi: 10.1002/embj.201386825. Epub 2014 Apr 23.

3.

The combination of autofluorescence endoscopy and molecular biomarkers is a novel diagnostic tool for dysplasia in Barrett's oesophagus.

di Pietro M, Boerwinkel DF, Shariff MK, Liu X, Telakis E, Lao-Sirieix P, Walker E, Couch G, Mills L, Nuckcheddy-Grant T, Slininger S, O'Donovan M, Visser M, Meijer SL, Kaye PV, Wernisch L, Ragunath K, Bergman JJ, Fitzgerald RC.

Gut. 2015 Jan;64(1):49-56. doi: 10.1136/gutjnl-2013-305975. Epub 2014 Apr 10.

4.

STEME: a robust, accurate motif finder for large data sets.

Reid JE, Wernisch L.

PLoS One. 2014 Mar 13;9(3):e90735. doi: 10.1371/journal.pone.0090735. eCollection 2014.

5.

Non-replicating Mycobacterium tuberculosis elicits a reduced infectivity profile with corresponding modifications to the cell wall and extracellular matrix.

Bacon J, Alderwick LJ, Allnutt JA, Gabasova E, Watson R, Hatch KA, Clark SO, Jeeves RE, Marriott A, Rayner E, Tolley H, Pearson G, Hall G, Besra GS, Wernisch L, Williams A, Marsh PD.

PLoS One. 2014 Feb 6;9(2):e87329. doi: 10.1371/journal.pone.0087329. eCollection 2014.

6.

Two novel pathway analysis methods based on a hierarchical model.

Evangelou M, Dudbridge F, Wernisch L.

Bioinformatics. 2014 Mar 1;30(5):690-7. doi: 10.1093/bioinformatics/btt583. Epub 2013 Oct 11.

7.

Testing the utility of an integrated analysis of copy number and transcriptomics datasets for inferring gene regulatory relationships.

Goh XY, Newton R, Wernisch L, Fitzgerald R.

PLoS One. 2013 May 30;8(5):e63780. doi: 10.1371/journal.pone.0063780. Print 2013.

8.

Transcription factor and chromatin features predict genes associated with eQTLs.

Wang D, Rendon A, Wernisch L.

Nucleic Acids Res. 2013 Feb 1;41(3):1450-63. doi: 10.1093/nar/gks1339. Epub 2012 Dec 28.

9.

DNA methylation as an adjunct to histopathology to detect prevalent, inconspicuous dysplasia and early-stage neoplasia in Barrett's esophagus.

Alvi MA, Liu X, O'Donovan M, Newton R, Wernisch L, Shannon NB, Shariff K, di Pietro M, Bergman JJ, Ragunath K, Fitzgerald RC.

Clin Cancer Res. 2013 Feb 15;19(4):878-88. doi: 10.1158/1078-0432.CCR-12-2880. Epub 2012 Dec 14.

10.

Cell signalling regulates dynamics of Nanog distribution in embryonic stem cell populations.

Luo Y, Lim CL, Nichols J, Martinez-Arias A, Wernisch L.

J R Soc Interface. 2012 Oct 10. [Epub ahead of print]

11.

Displaying R spatial statistics on Google dynamic maps with web applications created by Rwui.

Newton R, Deonarine A, Wernisch L.

Int J Health Geogr. 2012 Sep 24;11:41. doi: 10.1186/1476-072X-11-41.

12.

Comparison of methods for competitive tests of pathway analysis.

Evangelou M, Rendon A, Ouwehand WH, Wernisch L, Dudbridge F.

PLoS One. 2012;7(7):e41018. doi: 10.1371/journal.pone.0041018. Epub 2012 Jul 31.

13.

Transcription factor co-localization patterns affect human cell type-specific gene expression.

Wang D, Rendon A, Ouwehand W, Wernisch L.

BMC Genomics. 2012 Jun 21;13:263. doi: 10.1186/1471-2164-13-263.

14.

New gene functions in megakaryopoiesis and platelet formation.

Gieger C, Radhakrishnan A, Cvejic A, Tang W, Porcu E, Pistis G, Serbanovic-Canic J, Elling U, Goodall AH, Labrune Y, Lopez LM, Mägi R, Meacham S, Okada Y, Pirastu N, Sorice R, Teumer A, Voss K, Zhang W, Ramirez-Solis R, Bis JC, Ellinghaus D, Gögele M, Hottenga JJ, Langenberg C, Kovacs P, O'Reilly PF, Shin SY, Esko T, Hartiala J, Kanoni S, Murgia F, Parsa A, Stephens J, van der Harst P, Ellen van der Schoot C, Allayee H, Attwood A, Balkau B, Bastardot F, Basu S, Baumeister SE, Biino G, Bomba L, Bonnefond A, Cambien F, Chambers JC, Cucca F, D'Adamo P, Davies G, de Boer RA, de Geus EJ, Döring A, Elliott P, Erdmann J, Evans DM, Falchi M, Feng W, Folsom AR, Frazer IH, Gibson QD, Glazer NL, Hammond C, Hartikainen AL, Heckbert SR, Hengstenberg C, Hersch M, Illig T, Loos RJ, Jolley J, Khaw KT, Kühnel B, Kyrtsonis MC, Lagou V, Lloyd-Jones H, Lumley T, Mangino M, Maschio A, Mateo Leach I, McKnight B, Memari Y, Mitchell BD, Montgomery GW, Nakamura Y, Nauck M, Navis G, Nöthlings U, Nolte IM, Porteous DJ, Pouta A, Pramstaller PP, Pullat J, Ring SM, Rotter JI, Ruggiero D, Ruokonen A, Sala C, Samani NJ, Sambrook J, Schlessinger D, Schreiber S, Schunkert H, Scott J, Smith NL, Snieder H, Starr JM, Stumvoll M, Takahashi A, Tang WH, Taylor K, Tenesa A, Lay Thein S, Tönjes A, Uda M, Ulivi S, van Veldhuisen DJ, Visscher PM, Völker U, Wichmann HE, Wiggins KL, Willemsen G, Yang TP, Hua Zhao J, Zitting P, Bradley JR, Dedoussis GV, Gasparini P, Hazen SL, Metspalu A, Pirastu M, Shuldiner AR, Joost van Pelt L, Zwaginga JJ, Boomsma DI, Deary IJ, Franke A, Froguel P, Ganesh SK, Jarvelin MR, Martin NG, Meisinger C, Psaty BM, Spector TD, Wareham NJ, Akkerman JW, Ciullo M, Deloukas P, Greinacher A, Jupe S, Kamatani N, Khadake J, Kooner JS, Penninger J, Prokopenko I, Stemple D, Toniolo D, Wernisch L, Sanna S, Hicks AA, Rendon A, Ferreira MA, Ouwehand WH, Soranzo N.

Nature. 2011 Nov 30;480(7376):201-8. doi: 10.1038/nature10659.

15.

STEME: efficient EM to find motifs in large data sets.

Reid JE, Wernisch L.

Nucleic Acids Res. 2011 Oct;39(18):e126. doi: 10.1093/nar/gkr574. Epub 2011 Jul 23.

16.

Creating web applications for spatial epidemiological analysis and mapping in R using Rwui.

Newton R, Deonarine A, Wernisch L.

Source Code Biol Med. 2011 Apr 1;6(1):6. doi: 10.1186/1751-0473-6-6.

17.

Empirical Bayesian models for analysing molecular serotyping microarrays.

Newton R, Hinds J, Wernisch L.

BMC Bioinformatics. 2011 Mar 31;12:88. doi: 10.1186/1471-2105-12-88.

18.

An integrated machine learning approach for predicting DosR-regulated genes in Mycobacterium tuberculosis.

Zhang Y, Hatch KA, Bacon J, Wernisch L.

BMC Syst Biol. 2010 Mar 31;4:37. doi: 10.1186/1752-0509-4-37.

19.

Statistical model comparison applied to common network motifs.

Domedel-Puig N, Pournara I, Wernisch L.

BMC Syst Biol. 2010 Mar 3;4:18. doi: 10.1186/1752-0509-4-18.

20.

Variable structure motifs for transcription factor binding sites.

Reid JE, Evans KJ, Dyer N, Wernisch L, Ott S.

BMC Genomics. 2010 Jan 14;11:30. doi: 10.1186/1471-2164-11-30.

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