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Analysis artefacts of the INS-IGF2 fusion transcript.

Wernersson R, Frogne T, Rescan C, Hansson L, Bruun C, Grønborg M, Jensen JN, Madsen OD.

BMC Mol Biol. 2015 Jul 29;16(1):13. doi: 10.1186/s12867-015-0042-8.


[Posttraumatic stress disorder is correlated to irritable bowel syndrome.]

Wernersson R, Carlsson J.

Ugeskr Laeger. 2014 Dec 15;176(51). pii: V05140287. Danish.


Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes.

Santos A, Wernersson R, Jensen LJ.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1140-4. doi: 10.1093/nar/gku1092. Epub 2014 Nov 5.


Software-supported USER cloning strategies for site-directed mutagenesis and DNA assembly.

Genee HJ, Bonde MT, Bagger FO, Jespersen JB, Sommer MO, Wernersson R, Olsen LR.

ACS Synth Biol. 2015 Mar 20;4(3):342-9. doi: 10.1021/sb500194z. Epub 2014 May 21.


The strength of intron donor splice sites in human genes displays a bell-shaped pattern.

Wang K, Wernersson R, Brunak S.

Bioinformatics. 2011 Nov 15;27(22):3079-84. doi: 10.1093/bioinformatics/btr532. Epub 2011 Oct 12.


PHUSER (Primer Help for USER): a novel tool for USER fusion primer design.

Olsen LR, Hansen NB, Bonde MT, Genee HJ, Holm DK, Carlsen S, Hansen BG, Patil KR, Mortensen UH, Wernersson R.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W61-7. doi: 10.1093/nar/gkr394. Epub 2011 May 26.


Optimization of the BLASTN substitution matrix for prediction of non-specific DNA microarray hybridization.

Eklund AC, Friis P, Wernersson R, Szallasi Z.

Nucleic Acids Res. 2010 Mar;38(4):e27. doi: 10.1093/nar/gkp1116. Epub 2009 Dec 6.

8. version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results.

Gauthier NP, Jensen LJ, Wernersson R, Brunak S, Jensen TS.

Nucleic Acids Res. 2010 Jan;38(Database issue):D699-702. doi: 10.1093/nar/gkp1044. Epub 2009 Nov 24.


InterMap3D: predicting and visualizing co-evolving protein residues.

Gouveia-Oliveira R, Roque FS, Wernersson R, Sicheritz-Ponten T, Sackett PW, Mølgaard A, Pedersen AG.

Bioinformatics. 2009 Aug 1;25(15):1963-5. doi: 10.1093/bioinformatics/btp335. Epub 2009 Jun 15.


Probe design for expression arrays using OligoWiz.

Wernersson R.

Methods Mol Biol. 2009;529:23-36. doi: 10.1007/978-1-59745-538-1_2.


Probe selection for DNA microarrays using OligoWiz.

Wernersson R, Juncker AS, Nielsen HB.

Nat Protoc. 2007;2(11):2677-91.

12. comprehensive multi-organism online database of cell-cycle experiments.

Gauthier NP, Larsen ME, Wernersson R, de Lichtenberg U, Jensen LJ, Brunak S, Jensen TS.

Nucleic Acids Res. 2008 Jan;36(Database issue):D854-9. Epub 2007 Oct 16.


SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C.

Bioinformatics. 2007 Jul 1;23(13):i387-91.


Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags.

Gorodkin J, Cirera S, Hedegaard J, Gilchrist MJ, Panitz F, Jørgensen C, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Rosenkilde C, Wang J, Li H, Li R, Liu B, Hu S, Dong W, Li W, Yu J, Wang J, Staefeldt HH, Wernersson R, Madsen LB, Thomsen B, Hornshøj H, Bujie Z, Wang X, Wang X, Bolund L, Brunak S, Yang H, Bendixen C, Fredholm M.

Genome Biol. 2007;8(4):R45.


Improving comparability between microarray probe signals by thermodynamic intensity correction.

Bruun GM, Wernersson R, Juncker AS, Willenbrock H, Nielsen HB.

Nucleic Acids Res. 2007;35(7):e48. Epub 2007 Mar 2.


FeatureMap3D--a tool to map protein features and sequence conservation onto homologous structures in the PDB.

Wernersson R, Rapacki K, Staerfeldt HH, Sackett PW, Mølgaard A.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W84-8.


New weakly expressed cell cycle-regulated genes in yeast.

de Lichtenberg U, Wernersson R, Jensen TS, Nielsen HB, Fausbøll A, Schmidt P, Hansen FB, Knudsen S, Brunak S.

Yeast. 2005 Nov;22(15):1191-201.


OligoWiz 2.0--integrating sequence feature annotation into the design of microarray probes.

Wernersson R, Nielsen HB.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W611-5.

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