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Results: 1 to 20 of 21

1.

Software-supported USER cloning strategies for site-directed mutagenesis and DNA assembly.

Genee HJ, Bonde MT, Bagger FO, Jespersen JB, Sommer MO, Wernersson R, Olsen LR.

ACS Synth Biol. 2014 May 9. [Epub ahead of print]

PMID:
24847672
[PubMed - as supplied by publisher]
2.

The strength of intron donor splice sites in human genes displays a bell-shaped pattern.

Wang K, Wernersson R, Brunak S.

Bioinformatics. 2011 Nov 15;27(22):3079-84. doi: 10.1093/bioinformatics/btr532. Epub 2011 Oct 12.

PMID:
21994226
[PubMed - indexed for MEDLINE]
Free Article
3.

PHUSER (Primer Help for USER): a novel tool for USER fusion primer design.

Olsen LR, Hansen NB, Bonde MT, Genee HJ, Holm DK, Carlsen S, Hansen BG, Patil KR, Mortensen UH, Wernersson R.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W61-7. doi: 10.1093/nar/gkr394. Epub 2011 May 26.

PMID:
21622660
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Optimization of the BLASTN substitution matrix for prediction of non-specific DNA microarray hybridization.

Eklund AC, Friis P, Wernersson R, Szallasi Z.

Nucleic Acids Res. 2010 Mar;38(4):e27. doi: 10.1093/nar/gkp1116. Epub 2009 Dec 6.

PMID:
19969549
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results.

Gauthier NP, Jensen LJ, Wernersson R, Brunak S, Jensen TS.

Nucleic Acids Res. 2010 Jan;38(Database issue):D699-702. doi: 10.1093/nar/gkp1044. Epub 2009 Nov 24.

PMID:
19934261
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

InterMap3D: predicting and visualizing co-evolving protein residues.

Gouveia-Oliveira R, Roque FS, Wernersson R, Sicheritz-Ponten T, Sackett PW, Mølgaard A, Pedersen AG.

Bioinformatics. 2009 Aug 1;25(15):1963-5. doi: 10.1093/bioinformatics/btp335. Epub 2009 Jun 15.

PMID:
19528088
[PubMed - indexed for MEDLINE]
Free Article
7.

Probe design for expression arrays using OligoWiz.

Wernersson R.

Methods Mol Biol. 2009;529:23-36. doi: 10.1007/978-1-59745-538-1_2.

PMID:
19381972
[PubMed - indexed for MEDLINE]
8.

Probe selection for DNA microarrays using OligoWiz.

Wernersson R, Juncker AS, Nielsen HB.

Nat Protoc. 2007;2(11):2677-91.

PMID:
18007603
[PubMed - indexed for MEDLINE]
9.

Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments.

Gauthier NP, Larsen ME, Wernersson R, de Lichtenberg U, Jensen LJ, Brunak S, Jensen TS.

Nucleic Acids Res. 2008 Jan;36(Database issue):D854-9. Epub 2007 Oct 16.

PMID:
17940094
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C.

Bioinformatics. 2007 Jul 1;23(13):i387-91.

PMID:
17646321
[PubMed - indexed for MEDLINE]
Free Article
11.

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags.

Gorodkin J, Cirera S, Hedegaard J, Gilchrist MJ, Panitz F, Jørgensen C, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Rosenkilde C, Wang J, Li H, Li R, Liu B, Hu S, Dong W, Li W, Yu J, Wang J, Staefeldt HH, Wernersson R, Madsen LB, Thomsen B, Hornshøj H, Bujie Z, Wang X, Wang X, Bolund L, Brunak S, Yang H, Bendixen C, Fredholm M.

Genome Biol. 2007;8(4):R45.

PMID:
17407547
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Improving comparability between microarray probe signals by thermodynamic intensity correction.

Bruun GM, Wernersson R, Juncker AS, Willenbrock H, Nielsen HB.

Nucleic Acids Res. 2007;35(7):e48. Epub 2007 Mar 2.

PMID:
17337437
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

An overabundance of phase 0 introns immediately after the start codon in eukaryotic genes.

Nielsen H, Wernersson R.

BMC Genomics. 2006 Oct 11;7:256.

PMID:
17034638
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

FeatureMap3D--a tool to map protein features and sequence conservation onto homologous structures in the PDB.

Wernersson R, Rapacki K, Staerfeldt HH, Sackett PW, Mølgaard A.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W84-8.

PMID:
16845115
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Virtual Ribosome--a comprehensive DNA translation tool with support for integration of sequence feature annotation.

Wernersson R.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W385-8.

PMID:
16845033
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

New weakly expressed cell cycle-regulated genes in yeast.

de Lichtenberg U, Wernersson R, Jensen TS, Nielsen HB, Fausbøll A, Schmidt P, Hansen FB, Knudsen S, Brunak S.

Yeast. 2005 Nov;22(15):1191-201.

PMID:
16278933
[PubMed - indexed for MEDLINE]
17.

OligoWiz 2.0--integrating sequence feature annotation into the design of microarray probes.

Wernersson R, Nielsen HB.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W611-5.

PMID:
15980547
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

FeatureExtract--extraction of sequence annotation made easy.

Wernersson R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W567-9.

PMID:
15980537
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing.

Wernersson R, Schierup MH, Jørgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshøj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L.

BMC Genomics. 2005 May 10;6:70.

PMID:
15885146
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences.

Wernersson R, Pedersen AG.

Nucleic Acids Res. 2003 Jul 1;31(13):3537-9.

PMID:
12824361
[PubMed - indexed for MEDLINE]
Free PMC Article

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