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Results: 1 to 20 of 322

1.

Transcriptome Signature and Regulation in Human Somatic Cell Reprogramming.

Tanaka Y, Hysolli E, Su J, Xiang Y, Kim KY, Zhong M, Li Y, Heydari K, Euskirchen G, Snyder MP, Pan X, Weissman SM, Park IH.

Stem Cell Reports. 2015 Jun 9;4(6):1125-39. doi: 10.1016/j.stemcr.2015.04.009. Epub 2015 May 21.

2.

A comparative encyclopedia of DNA elements in the mouse genome.

Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See LH, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu YC, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, Lacerda de Sousa B, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Ramalho Santos M, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph S, Humbert R, Hansen RS, De Bruijn M, Selleri L, Rudensky A, Josefowicz S, Samstein R, Eichler EE, Orkin SH, Levasseur D, Papayannopoulou T, Chang KH, Skoultchi A, Gosh S, Disteche C, Treuting P, Wang Y, Weiss MJ, Blobel GA, Cao X, Zhong S, Wang T, Good PJ, Lowdon RF, Adams LB, Zhou XQ, Pazin MJ, Feingold EA, Wold B, Taylor J, Mortazavi A, Weissman SM, Stamatoyannopoulos JA, Snyder MP, Guigo R, Gingeras TR, Gilbert DM, Hardison RC, Beer MA, Ren B; Mouse ENCODE Consortium.

Nature. 2014 Nov 20;515(7527):355-64. doi: 10.1038/nature13992.

3.

Co-detection and sequencing of genes and transcripts from the same single cells facilitated by a microfluidics platform.

Han L, Zi X, Garmire LX, Wu Y, Weissman SM, Pan X, Fan R.

Sci Rep. 2014 Sep 26;4:6485. doi: 10.1038/srep06485.

4.

Cancer genetic testing panels for inherited cancer susceptibility: the clinical experience of a large adult genetics practice.

Selkirk CG, Vogel KJ, Newlin AC, Weissman SM, Weiss SM, Wang CH, Hulick PJ.

Fam Cancer. 2014 Dec;13(4):527-36. doi: 10.1007/s10689-014-9741-4.

PMID:
25117502
5.

X Chromosome of female cells shows dynamic changes in status during human somatic cell reprogramming.

Kim KY, Hysolli E, Tanaka Y, Wang B, Jung YW, Pan X, Weissman SM, Park IH.

Stem Cell Reports. 2014 May 15;2(6):896-909. doi: 10.1016/j.stemcr.2014.04.003. eCollection 2014 Jun 3.

6.
7.

Extended lifespan and reduced adiposity in mice lacking the FAT10 gene.

Canaan A, DeFuria J, Perelman E, Schultz V, Seay M, Tuck D, Flavell RA, Snyder MP, Obin MS, Weissman SM.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5313-8. doi: 10.1073/pnas.1323426111. Epub 2014 Mar 24.

8.

Nonstochastic reprogramming from a privileged somatic cell state.

Guo S, Zi X, Schulz VP, Cheng J, Zhong M, Koochaki SH, Megyola CM, Pan X, Heydari K, Weissman SM, Gallagher PG, Krause DS, Fan R, Lu J.

Cell. 2014 Feb 13;156(4):649-62. doi: 10.1016/j.cell.2014.01.020. Epub 2014 Jan 30.

9.

Transcriptional regulation in pluripotent stem cells by methyl CpG-binding protein 2 (MeCP2).

Tanaka Y, Kim KY, Zhong M, Pan X, Weissman SM, Park IH.

Hum Mol Genet. 2014 Feb 15;23(4):1045-55. doi: 10.1093/hmg/ddt500. Epub 2013 Oct 15.

10.

Functional genomic screen of human stem cell differentiation reveals pathways involved in neurodevelopment and neurodegeneration.

Zhang Y, Schulz VP, Reed BD, Wang Z, Pan X, Mariani J, Euskirchen G, Snyder MP, Vaccarino FM, Ivanova N, Weissman SM, Szekely AM.

Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12361-6. doi: 10.1073/pnas.1309725110. Epub 2013 Jul 8.

11.

Robust measurement of telomere length in single cells.

Wang F, Pan X, Kalmbach K, Seth-Smith ML, Ye X, Antumes DM, Yin Y, Liu L, Keefe DL, Weissman SM.

Proc Natl Acad Sci U S A. 2013 May 21;110(21):E1906-12. doi: 10.1073/pnas.1306639110. Epub 2013 May 9.

12.

Physicians' preparedness for integration of genomic and pharmacogenetic testing into practice within a major healthcare system.

Selkirk CG, Weissman SM, Anderson A, Hulick PJ.

Genet Test Mol Biomarkers. 2013 Mar;17(3):219-25. doi: 10.1089/gtmb.2012.0165. Epub 2013 Feb 7.

PMID:
23390885
13.

Cell engineering with synthetic messenger RNA.

Rabinovich PM, Weissman SM.

Methods Mol Biol. 2013;969:3-28. doi: 10.1007/978-1-62703-260-5_1. Review.

PMID:
23296924
14.

Two methods for full-length RNA sequencing for low quantities of cells and single cells.

Pan X, Durrett RE, Zhu H, Tanaka Y, Li Y, Zi X, Marjani SL, Euskirchen G, Ma C, Lamotte RH, Park IH, Snyder MP, Mason CE, Weissman SM.

Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):594-9. doi: 10.1073/pnas.1217322109. Epub 2012 Dec 24.

15.

The variable somatic genome.

O'Huallachain M, Weissman SM, Snyder MP.

Cell Cycle. 2013 Jan 1;12(1):5-6. doi: 10.4161/cc.23069. Epub 2012 Dec 19. No abstract available.

16.

Extensive genetic variation in somatic human tissues.

O'Huallachain M, Karczewski KJ, Weissman SM, Urban AE, Snyder MP.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):18018-23. doi: 10.1073/pnas.1213736109. Epub 2012 Oct 5.

17.

A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells.

Charos AE, Reed BD, Raha D, Szekely AM, Weissman SM, Snyder M.

Genome Res. 2012 Sep;22(9):1668-79. doi: 10.1101/gr.127761.111.

18.

Architecture of the human regulatory network derived from ENCODE data.

Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, Alexander R, Min R, Alves P, Abyzov A, Addleman N, Bhardwaj N, Boyle AP, Cayting P, Charos A, Chen DZ, Cheng Y, Clarke D, Eastman C, Euskirchen G, Frietze S, Fu Y, Gertz J, Grubert F, Harmanci A, Jain P, Kasowski M, Lacroute P, Leng J, Lian J, Monahan H, O'Geen H, Ouyang Z, Partridge EC, Patacsil D, Pauli F, Raha D, Ramirez L, Reddy TE, Reed B, Shi M, Slifer T, Wang J, Wu L, Yang X, Yip KY, Zilberman-Schapira G, Batzoglou S, Sidow A, Farnham PJ, Myers RM, Weissman SM, Snyder M.

Nature. 2012 Sep 6;489(7414):91-100. doi: 10.1038/nature11245.

19.

An encyclopedia of mouse DNA elements (Mouse ENCODE).

Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, Byron R, Roach V, Sabo PJ, Sandstrom R, Stehling AS, Thurman RE, Weissman SM, Cayting P, Hariharan M, Lian J, Cheng Y, Landt SG, Ma Z, Wold BJ, Dekker J, Crawford GE, Keller CA, Wu W, Morrissey C, Kumar SA, Mishra T, Jain D, Byrska-Bishop M, Blankenberg D, Lajoie BR, Jain G, Sanyal A, Chen KB, Denas O, Taylor J, Blobel GA, Weiss MJ, Pimkin M, Deng W, Marinov GK, Williams BA, Fisher-Aylor KI, Desalvo G, Kiralusha A, Trout D, Amrhein H, Mortazavi A, Edsall L, McCleary D, Kuan S, Shen Y, Yue F, Ye Z, Davis CA, Zaleski C, Jha S, Xue C, Dobin A, Lin W, Fastuca M, Wang H, Guigo R, Djebali S, Lagarde J, Ryba T, Sasaki T, Malladi VS, Cline MS, Kirkup VM, Learned K, Rosenbloom KR, Kent WJ, Feingold EA, Good PJ, Pazin M, Lowdon RF, Adams LB.

Genome Biol. 2012 Aug 13;13(8):418. doi: 10.1186/gb-2012-13-8-418.

20.

Genetic testing by cancer site: ovary.

Weissman SM, Weiss SM, Newlin AC.

Cancer J. 2012 Jul-Aug;18(4):320-7. doi: 10.1097/PPO.0b013e31826246c2. Review.

PMID:
22846732
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