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Results: 1 to 20 of 287

1.

Longitudinal Analysis of the Premature Infant Intestinal Microbiome Prior to Necrotizing Enterocolitis: A Case-Control Study.

Zhou Y, Shan G, Sodergren E, Weinstock G, Walker WA, Gregory KE.

PLoS One. 2015 Mar 5;10(3):e0118632. doi: 10.1371/journal.pone.0118632. eCollection 2015.

PMID:
25741698
[PubMed - as supplied by publisher]
2.

Identification of Functional Variants for Cleft Lip with or without Cleft Palate in or near PAX7, FGFR2, and NOG by Targeted Sequencing of GWAS Loci.

Leslie EJ, Taub MA, Liu H, Steinberg KM, Koboldt DC, Zhang Q, Carlson JC, Hetmanski JB, Wang H, Larson DE, Fulton RS, Kousa YA, Fakhouri WD, Naji A, Ruczinski I, Begum F, Parker MM, Busch T, Standley J, Rigdon J, Hecht JT, Scott AF, Wehby GL, Christensen K, Czeizel AE, Deleyiannis FW, Schutte BC, Wilson RK, Cornell RA, Lidral AC, Weinstock GM, Beaty TH, Marazita ML, Murray JC.

Am J Hum Genet. 2015 Feb 17. pii: S0002-9297(15)00012-9. doi: 10.1016/j.ajhg.2015.01.004. [Epub ahead of print]

PMID:
25704602
[PubMed - as supplied by publisher]
3.

Dynamic changes in the subgingival microbiome and their potential for diagnosis and prognosis of periodontitis.

Shi B, Chang M, Martin J, Mitreva M, Lux R, Klokkevold P, Sodergren E, Weinstock GM, Haake SK, Li H.

MBio. 2015 Feb 17;6(1):e01926-14. doi: 10.1128/mBio.01926-14.

PMID:
25691586
[PubMed - in process]
Free PMC Article
4.

A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2.

Didion JP, Morgan AP, Clayshulte AM, Mcmullan RC, Yadgary L, Petkov PM, Bell TA, Gatti DM, Crowley JJ, Hua K, Aylor DL, Bai L, Calaway M, Chesler EJ, French JE, Geiger TR, Gooch TJ, Garland T Jr, Harrill AH, Hunter K, McMillan L, Holt M, Miller DR, O'Brien DA, Paigen K, Pan W, Rowe LB, Shaw GD, Simecek P, Sullivan PF, Svenson KL, Weinstock GM, Threadgill DW, Pomp D, Churchill GA, Pardo-Manuel de Villena F.

PLoS Genet. 2015 Feb 13;11(2):e1004850. doi: 10.1371/journal.pgen.1004850. eCollection 2015 Feb.

PMID:
25679959
[PubMed - in process]
Free PMC Article
5.

Selection of models for the analysis of risk-factor trees: leveraging biological knowledge to mine large sets of risk factors with application to microbiome data.

Zhang Q, Abel H, Wells A, Lenzini P, Gomez F, Province MA, Templeton AA, Weinstock GM, Salzman NH, Borecki IB.

Bioinformatics. 2015 Jan 6. pii: btu855. [Epub ahead of print]

PMID:
25568281
[PubMed - as supplied by publisher]
6.

Microbial sequencing to improve individual and population health.

Peacock SJ, Weinstock GM.

Genome Med. 2014 Nov 19;6(11):103. doi: 10.1186/s13073-014-0103-5. eCollection 2014.

PMID:
25505493
[PubMed]
Free PMC Article
7.

The conjunctival microbiome in health and trachomatous disease: a case control study.

Zhou Y, Holland MJ, Makalo P, Joof H, Roberts CH, Mabey DC, Bailey RL, Burton MJ, Weinstock GM, Burr SE.

Genome Med. 2014 Nov 15;6(11):99. doi: 10.1186/s13073-014-0099-x. eCollection 2014.

PMID:
25484919
[PubMed]
Free PMC Article
8.

HCoDES reveals chromosomal DNA end structures with single-nucleotide resolution.

Dorsett Y, Zhou Y, Tubbs AT, Chen BR, Purman C, Lee BS, George R, Bredemeyer AL, Zhao JY, Sodergen E, Weinstock GM, Han ND, Reyes A, Oltz EM, Dorsett D, Misulovin Z, Payton JE, Sleckman BP.

Mol Cell. 2014 Dec 18;56(6):808-18. doi: 10.1016/j.molcel.2014.10.024. Epub 2014 Nov 26.

PMID:
25435138
[PubMed - in process]
9.

Next-generation pathogen genomics.

Weinstock GM, Peacock SJ.

Genome Biol. 2014 Nov 19;15(11):528. doi: 10.1186/s13059-014-0528-6. No abstract available.

PMID:
25417942
[PubMed - in process]
Free PMC Article
10.

Inactivation of SAM-methyltransferase is the mechanism of attenuation of a historic louse borne typhus vaccine strain.

Liu Y, Wu B, Weinstock G, Walker DH, Yu XJ.

PLoS One. 2014 Nov 20;9(11):e113285. doi: 10.1371/journal.pone.0113285. eCollection 2014.

PMID:
25412248
[PubMed - in process]
Free PMC Article
11.

Whole genome sequence of the Treponema pallidum subsp. endemicum strain Bosnia A: the genome is related to yaws treponemes but contains few loci similar to syphilis treponemes.

Staudová B, Strouhal M, Zobaníková M, Cejková D, Fulton LL, Chen L, Giacani L, Centurion-Lara A, Bruisten SM, Sodergren E, Weinstock GM, Smajs D.

PLoS Negl Trop Dis. 2014 Nov 6;8(11):e3261. doi: 10.1371/journal.pntd.0003261. eCollection 2014 Nov.

PMID:
25375929
[PubMed - in process]
Free PMC Article
12.

High-resolution genetic mapping in the diversity outbred mouse population identifies Apobec1 as a candidate gene for atherosclerosis.

Smallwood TL, Gatti DM, Quizon P, Weinstock GM, Jung KC, Zhao L, Hua K, Pomp D, Bennett BJ.

G3 (Bethesda). 2014 Oct 23;4(12):2353-63. doi: 10.1534/g3.114.014704.

PMID:
25344410
[PubMed - in process]
Free PMC Article
13.

Phenotypic and genotypic analysis of Clostridium difficile isolates: a single-center study.

Zhou Y, Burnham CA, Hink T, Chen L, Shaikh N, Wollam A, Sodergren E, Weinstock GM, Tarr PI, Dubberke ER.

J Clin Microbiol. 2014 Dec;52(12):4260-6. doi: 10.1128/JCM.02115-14. Epub 2014 Oct 1.

PMID:
25275005
[PubMed - in process]
14.

Metagenomic analysis of double-stranded DNA viruses in healthy adults.

Wylie KM, Mihindukulasuriya KA, Zhou Y, Sodergren E, Storch GA, Weinstock GM.

BMC Biol. 2014 Sep 10;12:71. doi: 10.1186/s12915-014-0071-7.

PMID:
25212266
[PubMed - in process]
Free PMC Article
15.

A dominant mutation in hexokinase 1 (HK1) causes retinitis pigmentosa.

Sullivan LS, Koboldt DC, Bowne SJ, Lang S, Blanton SH, Cadena E, Avery CE, Lewis RA, Webb-Jones K, Wheaton DH, Birch DG, Coussa R, Ren H, Lopez I, Chakarova C, Koenekoop RK, Garcia CA, Fulton RS, Wilson RK, Weinstock GM, Daiger SP.

Invest Ophthalmol Vis Sci. 2014 Sep 4;55(11):7147-58. doi: 10.1167/iovs.14-15419.

PMID:
25190649
[PubMed - indexed for MEDLINE]
16.

Small bowel resection induces long-term changes in the enteric microbiota of mice.

Sommovilla J, Zhou Y, Sun RC, Choi PM, Diaz-Miron J, Shaikh N, Sodergren E, Warner BB, Weinstock GM, Tarr PI, Warner BW.

J Gastrointest Surg. 2015 Jan;19(1):56-64; discussion 64. doi: 10.1007/s11605-014-2631-0. Epub 2014 Sep 3.

PMID:
25183407
[PubMed - in process]
17.

Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages.

Deng X, Desai PT, den Bakker HC, Mikoleit M, Tolar B, Trees E, Hendriksen RS, Frye JG, Porwollik S, Weimer BC, Wiedmann M, Weinstock GM, Fields PI, McClelland M.

Emerg Infect Dis. 2014 Sep;20(9):1481-9. doi: 10.3201/eid2009.131095.

PMID:
25147968
[PubMed - in process]
Free PMC Article
18.

Patterned progression of bacterial populations in the premature infant gut.

La Rosa PS, Warner BB, Zhou Y, Weinstock GM, Sodergren E, Hall-Moore CM, Stevens HJ, Bennett WE Jr, Shaikh N, Linneman LA, Hoffmann JA, Hamvas A, Deych E, Shands BA, Shannon WD, Tarr PI.

Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):12522-7. doi: 10.1073/pnas.1409497111. Epub 2014 Aug 11. Erratum in: Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17336.

PMID:
25114261
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.

Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, Detter JC, De Vos P, Donohue TJ, Dong XZ, Ehrlich DS, Fraser C, Gibbs R, Gilbert J, Gilna P, Glöckner FO, Jansson JK, Keasling JD, Knight R, Labeda D, Lapidus A, Lee JS, Li WJ, Ma J, Markowitz V, Moore ER, Morrison M, Meyer F, Nelson KE, Ohkuma M, Ouzounis CA, Pace N, Parkhill J, Qin N, Rossello-Mora R, Sikorski J, Smith D, Sogin M, Stevens R, Stingl U, Suzuki K, Taylor D, Tiedje JM, Tindall B, Wagner M, Weinstock G, Weissenbach J, White O, Wang J, Zhang L, Zhou YG, Field D, Whitman WB, Garrity GM, Klenk HP.

PLoS Biol. 2014 Aug 5;12(8):e1001920. doi: 10.1371/journal.pbio.1001920. eCollection 2014 Aug.

PMID:
25093819
[PubMed - in process]
Free PMC Article
20.

Characterization of mutations in the PAS domain of the EvgS sensor kinase selected by laboratory evolution for acid resistance in Escherichia coli.

Johnson MD, Bell J, Clarke K, Chandler R, Pathak P, Xia Y, Marshall RL, Weinstock GM, Loman NJ, Winn PJ, Lund PA.

Mol Microbiol. 2014 Sep;93(5):911-27. doi: 10.1111/mmi.12704. Epub 2014 Jul 24.

PMID:
24995530
[PubMed - in process]
Free PMC Article
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