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Using experimental data of Escherichia coli to develop a QSAR model for predicting the photo-induced cytotoxicity of metal oxide nanoparticles.

Pathakoti K, Huang MJ, Watts JD, He X, Hwang HM.

J Photochem Photobiol B. 2014 Jan 5;130:234-40. doi: 10.1016/j.jphotobiol.2013.11.023. Epub 2013 Dec 4.


State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project.

Farrah T, Deutsch EW, Omenn GS, Sun Z, Watts JD, Yamamoto T, Shteynberg D, Harris MM, Moritz RL.

J Proteome Res. 2014 Jan 3;13(1):60-75. doi: 10.1021/pr4010037. Epub 2013 Dec 6.


Self-assembled ErSb nanostructures with optical applications in infrared and terahertz.

Lu H, Ouellette DG, Preu S, Watts JD, Zaks B, Burke PG, Sherwin MS, Gossard AC.

Nano Lett. 2014 Mar 12;14(3):1107-12. doi: 10.1021/nl402436g. Epub 2013 Nov 14.


Binding of O2 and NO to heme in heme-nitric oxide/oxygen-binding (H-NOX) proteins. A theoretical study.

Liao MS, Huang MJ, Watts JD.

J Phys Chem B. 2013 Sep 5;117(35):10103-14. doi: 10.1021/jp403998u. Epub 2013 Aug 22.


Effects of local protein environment on the binding of diatomic molecules to heme in myoglobins. DFT and dispersion-corrected DFT studies.

Liao MS, Huang MJ, Watts JD.

J Mol Model. 2013 Aug;19(8):3307-23. doi: 10.1007/s00894-013-1864-2. Epub 2013 May 10.


Factors that distort the heme structure in Heme-Nitric Oxide/OXygen-Binding (H-NOX) protein domains. A theoretical study.

Liao MS, Huang MJ, Watts JD.

J Inorg Biochem. 2013 Jan;118:28-38. doi: 10.1016/j.jinorgbio.2012.09.011. Epub 2012 Sep 16.


An assessment of current bioinformatic solutions for analyzing LC-MS data acquired by selected reaction monitoring technology.

Brusniak MY, Chu CS, Kusebauch U, Sartain MJ, Watts JD, Moritz RL.

Proteomics. 2012 Apr;12(8):1176-84. doi: 10.1002/pmic.201100571. Review.


Theoretical investigation into the structural, thermochemical, and electronic properties of the decathio[10]circulene.

Napolion B, Hagelberg F, Huang MJ, Watts JD, Simeon TM, Vereen D, Walters WL, Williams QL.

J Phys Chem A. 2011 Aug 11;115(31):8682-90. doi: 10.1021/jp1122773. Epub 2011 Jul 19.


Understanding and integrating local perceptions of trees and forests into incentives for sustainable landscape management.

Pfund JL, Watts JD, Boissière M, Boucard A, Bullock RM, Ekadinata A, Dewi S, Feintrenie L, Levang P, Rantala S, Sheil D, Sunderland T, Urech ZL.

Environ Manage. 2011 Aug;48(2):334-49. doi: 10.1007/s00267-011-9689-1. Epub 2011 Jun 5. Erratum in: Environ Manage. 2011 Aug;48(2):350. Sunderland, Terence Clarence Heethom [corrected to Sunderland, Terry].


A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.

Farrah T, Deutsch EW, Omenn GS, Campbell DS, Sun Z, Bletz JA, Mallick P, Katz JE, Malmström J, Ossola R, Watts JD, Lin B, Zhang H, Moritz RL, Aebersold R.

Mol Cell Proteomics. 2011 Sep;10(9):M110.006353. doi: 10.1074/mcp.M110.006353. Epub 2011 Jun 1.


Structure, bonding, and linear optical properties of a series of silver and gold nanorod clusters: DFT/TDDFT studies.

Liao MS, Bonifassi P, Leszczynski J, Ray PC, Huang MJ, Watts JD.

J Phys Chem A. 2010 Dec 9;114(48):12701-8. doi: 10.1021/jp105354n. Epub 2010 Nov 9.


Theoretical characterization of the F(2)O(3) molecule by coupled-cluster methods.

Huang MJ, Watts JD.

J Phys Chem A. 2010 Sep 23;114(37):10197-201. doi: 10.1021/jp101106n.


Iron porphyrins with different imidazole ligands. A theoretical comparative study.

Liao MS, Huang MJ, Watts JD.

J Phys Chem A. 2010 Sep 9;114(35):9554-69. doi: 10.1021/jp1052216.


Supramolecular interactions of fullerenes with (Cl)Fe- and Mn porphyrins. A theoretical study.

Liao MS, Watts JD, Huang MJ.

Phys Chem Chem Phys. 2009 Aug 7;11(29):6072-81. doi: 10.1039/b904782d. Epub 2009 May 18.


Dispersion-corrected DFT calculations on C(60)-porphyrin complexes.

Liao MS, Watts JD, Huang MJ.

Phys Chem Chem Phys. 2009 Jun 7;11(21):4365-74. doi: 10.1039/b820667h. Epub 2009 Mar 26.


Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometry.

Mirzaei H, Brusniak MY, Mueller LN, Letarte S, Watts JD, Aebersold R.

Mol Cell Proteomics. 2009 Aug;8(8):1934-46. doi: 10.1074/mcp.M800569-MCP200. Epub 2009 May 1.


Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.

Wollscheid B, Bausch-Fluck D, Henderson C, O'Brien R, Bibel M, Schiess R, Aebersold R, Watts JD.

Nat Biotechnol. 2009 Apr;27(4):378-86. doi: 10.1038/nbt.1532. Epub 2009 Apr 6. Erratum in: Nat Biotechnol. 2009 Sep;27(9):864.

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