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Items: 1 to 20 of 205

1.

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing.

Wang B, Tseng E, Regulski M, Clark TA, Hon T, Jiao Y, Lu Z, Olson A, Stein JC, Ware D.

Nat Commun. 2016 Jun 24;7:11708. doi: 10.1038/ncomms11708.

PMID:
27339440
2.

Lighting up sugars: fluorescent BODIPY-gluco-furanose and -septanose conjugates linked by direct B-O-C bonds.

Liu B, Novikova N, Simpson MC, Timmer MS, Stocker BL, Söhnel T, Ware DC, Brothers PJ.

Org Biomol Chem. 2016 Jun 21;14(23):5205-9. doi: 10.1039/c6ob00726k. Epub 2016 May 20.

PMID:
27205874
3.

Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis.

He F, Yoo S, Wang D, Kumari S, Gerstein M, Ware D, Maslov S.

Plant J. 2016 Mar 25. doi: 10.1111/tpj.13175. [Epub ahead of print]

PMID:
27015116
4.

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences.

Merchant N, Lyons E, Goff S, Vaughn M, Ware D, Micklos D, Antin P.

PLoS Biol. 2016 Jan 11;14(1):e1002342. doi: 10.1371/journal.pbio.1002342. eCollection 2016 Jan.

5.

An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize.

Liu H, Niu Y, Gonzalez-Portilla PJ, Zhou H, Wang L, Zuo T, Qin C, Tai S, Jansen C, Shen Y, Lin H, Lee M, Ware D, Zhang Z, Lübberstedt T, Pan G.

BMC Genomics. 2015 Dec 21;16:1078. doi: 10.1186/s12864-015-2242-5.

6.

Genome Sequence of a Chromium-Reducing Strain, Bacillus cereus S612.

Wang D, Boukhalfa H, Ware DS, Reimus PW, Daligault HE, Gleasner CD, Johnson SL, Li PE.

Genome Announc. 2015 Dec 10;3(6). pii: e01392-15. doi: 10.1128/genomeA.01392-15.

7.

Higher Incidence of Pulmonary Hypertension in Antiphospholipid Antibody Positive Lupus.

Ware D, Sharma V, Kalekar L, Kamble A, Mahajan A, Gokhale Y.

J Assoc Physicians India. 2015 Apr;63(4):17-20.

PMID:
26591164
8.

Ensembl Genomes 2016: more genomes, more complexity.

Kersey PJ, Allen JE, Armean I, Boddu S, Bolt BJ, Carvalho-Silva D, Christensen M, Davis P, Falin LJ, Grabmueller C, Humphrey J, Kerhornou A, Khobova J, Aranganathan NK, Langridge N, Lowy E, McDowall MD, Maheswari U, Nuhn M, Ong CK, Overduin B, Paulini M, Pedro H, Perry E, Spudich G, Tapanari E, Walts B, Williams G, Tello-Ruiz M, Stein J, Wei S, Ware D, Bolser DM, Howe KL, Kulesha E, Lawson D, Maslen G, Staines DM.

Nucleic Acids Res. 2016 Jan 4;44(D1):D574-80. doi: 10.1093/nar/gkv1209. Epub 2015 Nov 17.

9.

Gramene 2016: comparative plant genomics and pathway resources.

Tello-Ruiz MK, Stein J, Wei S, Preece J, Olson A, Naithani S, Amarasinghe V, Dharmawardhana P, Jiao Y, Mulvaney J, Kumari S, Chougule K, Elser J, Wang B, Thomason J, Bolser DM, Kerhornou A, Walts B, Fonseca NA, Huerta L, Keays M, Tang YA, Parkinson H, Fabregat A, McKay S, Weiser J, D'Eustachio P, Stein L, Petryszak R, Kersey PJ, Jaiswal P, Ware D.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1133-40. doi: 10.1093/nar/gkv1179. Epub 2015 Nov 8.

10.

Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.

Tello-Ruiz MK, Stein J, Wei S, Youens-Clark K, Jaiswal P, Ware D.

Methods Mol Biol. 2016;1374:141-63. doi: 10.1007/978-1-4939-3167-5_7.

PMID:
26519404
11.

Correction: Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis.

Noutsos C, Perera AM, Nikolau BJ, Seaver SM, Ware DH.

PLoS One. 2015 Oct 22;10(10):e0141384. doi: 10.1371/journal.pone.0141384. eCollection 2015. No abstract available.

12.

Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis.

Noutsos C, Perera AM, Nikolau BJ, Seaver SM, Ware DH.

PLoS One. 2015 May 1;10(5):e0124501. doi: 10.1371/journal.pone.0124501. eCollection 2015. Erratum in: PLoS One. 2015;10(10):e0141384.

13.

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Di Genova A, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A.

Nucleic Acids Res. 2015 Jul 1;43(W1):W589-98. doi: 10.1093/nar/gkv350. Epub 2015 Apr 20.

14.

Transcathater percutaneous device closure of a large PDA closed in a 3 kg infant.

Bansal NO, Prabhu S, Ware D, Shivapuje SK.

Indian Heart J. 2014 Nov-Dec;66(6):707-9. doi: 10.1016/j.ihj.2014.12.002. Epub 2014 Dec 17.

15.

Evaluation of the dopamine β-hydroxylase (DβH) inhibitor nepicastat in participants who meet criteria for cocaine use disorder.

De La Garza R 2nd, Bubar MJ, Carbone CL, Moeller FG, Newton TF, Anastasio NC, Harper TA, Ware DL, Fuller MA, Holstein GJ, Jayroe JB, Bandak SI, Reiman KZ, Neale AC, Pickford LB, Cunningham KA.

Prog Neuropsychopharmacol Biol Psychiatry. 2015 Jun 3;59:40-8. doi: 10.1016/j.pnpbp.2015.01.009. Epub 2015 Jan 17.

16.

Detection of influenza antigenic variants directly from clinical samples using polyclonal antibody based proximity ligation assays.

Martin BE, Jia K, Sun H, Ye J, Hall C, Ware D, Wan XF.

Virology. 2015 Feb;476:151-8. doi: 10.1016/j.virol.2014.11.029. Epub 2014 Dec 26.

17.

An Arabidopsis gene regulatory network for secondary cell wall synthesis.

Taylor-Teeples M, Lin L, de Lucas M, Turco G, Toal TW, Gaudinier A, Young NF, Trabucco GM, Veling MT, Lamothe R, Handakumbura PP, Xiong G, Wang C, Corwin J, Tsoukalas A, Zhang L, Ware D, Pauly M, Kliebenstein DJ, Dehesh K, Tagkopoulos I, Breton G, Pruneda-Paz JL, Ahnert SE, Kay SA, Hazen SP, Brady SM.

Nature. 2015 Jan 29;517(7536):571-5. doi: 10.1038/nature14099. Epub 2014 Dec 24.

18.

Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica.

Schatz MC, Maron LG, Stein JC, Hernandez Wences A, Gurtowski J, Biggers E, Lee H, Kramer M, Antoniou E, Ghiban E, Wright MH, Chia JM, Ware D, McCouch SR, McCombie WR.

Genome Biol. 2014;15(11):506.

19.

Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes.

Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, Yandell M.

Plant Physiol. 2015 Jan;167(1):25-39. doi: 10.1104/pp.114.245027. Epub 2014 Nov 10.

20.

Best practices for increasing access to SSI and SSDI on exit from criminal justice settings.

Dennis D, Ware D, Steadman HJ.

Psychiatr Serv. 2014 Sep 1;65(9):1081-3. doi: 10.1176/appi.ps.201400120.

PMID:
24981962
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