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Results: 1 to 20 of 98

1.

GenoBase: comprehensive resource database of Escherichia coli K-12.

Otsuka Y, Muto A, Takeuchi R, Okada C, Ishikawa M, Nakamura K, Yamamoto N, Dose H, Nakahigashi K, Tanishima S, Suharnan S, Nomura W, Nakayashiki T, Aref WG, Bochner BR, Conway T, Gribskov M, Kihara D, Rudd KE, Tohsato Y, Wanner BL, Mori H.

Nucleic Acids Res. 2014 Nov 15. pii: gku1164. [Epub ahead of print]

PMID:
25399415
[PubMed - as supplied by publisher]
Free Article
2.

Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing.

Conway T, Creecy JP, Maddox SM, Grissom JE, Conkle TL, Shadid TM, Teramoto J, San Miguel P, Shimada T, Ishihama A, Mori H, Wanner BL.

MBio. 2014 Jul 8;5(4):e01442-14. doi: 10.1128/mBio.01442-14.

PMID:
25006232
[PubMed - in process]
Free PMC Article
3.

Colony-live--a high-throughput method for measuring microbial colony growth kinetics--reveals diverse growth effects of gene knockouts in Escherichia coli.

Takeuchi R, Tamura T, Nakayashiki T, Tanaka Y, Muto A, Wanner BL, Mori H.

BMC Microbiol. 2014 Jun 26;14:171. doi: 10.1186/1471-2180-14-171.

PMID:
24964927
[PubMed - in process]
Free PMC Article
4.

Development of a system for discovery of genetic interactions for essential genes in Escherichia coli K-12.

Yong HT, Yamamoto N, Takeuchi R, Hsieh YJ, Conrad TM, Datsenko KA, Nakayashiki T, Wanner BL, Mori H.

Genes Genet Syst. 2013;88(4):233-40.

PMID:
24463526
[PubMed - indexed for MEDLINE]
Free Article
5.

Dynamics of the serine chemoreceptor in the Escherichia coli inner membrane: a high-speed single-molecule tracking study.

Oh D, Yu Y, Lee H, Wanner BL, Ritchie K.

Biophys J. 2014 Jan 7;106(1):145-53. doi: 10.1016/j.bpj.2013.09.059.

PMID:
24411246
[PubMed - indexed for MEDLINE]
6.

What hath DNA wrought? CRISPR-CAS gene silencing and engineering from bacteria to humans: comment on "Diversity, evolution, and therapeutic applications of small RNAs in prokaryotic and eukaryotic immune systems" by Edwin L. Cooper and Nicola Overstreet.

Wanner BL, Teramoto J, Mori H.

Phys Life Rev. 2014 Mar;11(1):144-5; discussion 149-51. doi: 10.1016/j.plrev.2013.12.003. Epub 2013 Dec 12. No abstract available.

PMID:
24365232
[PubMed - indexed for MEDLINE]
7.

The tRNA thiolation pathway modulates the intracellular redox state in Escherichia coli.

Nakayashiki T, Saito N, Takeuchi R, Kadokura H, Nakahigashi K, Wanner BL, Mori H.

J Bacteriol. 2013 May;195(9):2039-49. doi: 10.1128/JB.02180-12. Epub 2013 Mar 1.

PMID:
23457245
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system.

Datsenko KA, Pougach K, Tikhonov A, Wanner BL, Severinov K, Semenova E.

Nat Commun. 2012 Jul 10;3:945. doi: 10.1038/ncomms1937.

PMID:
22781758
[PubMed - indexed for MEDLINE]
9.

Characterization of peptide chain length and constituency requirements for YejABEF-mediated uptake of microcin C analogues.

Vondenhoff GH, Blanchaert B, Geboers S, Kazakov T, Datsenko KA, Wanner BL, Rozenski J, Severinov K, Van Aerschot A.

J Bacteriol. 2011 Jul;193(14):3618-23. doi: 10.1128/JB.00172-11. Epub 2011 May 20.

PMID:
21602342
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Welcome to microbial informatics and experimentation.

Wise MJ, Wanner BL.

Microb Inform Exp. 2011 Jun 14;1(1):1. doi: 10.1186/2042-5783-1-1. No abstract available.

PMID:
22587655
[PubMed]
Free PMC Article
11.

Environmental dependency of gene knockouts on phenotype microarray analysis in Escherichia coli.

Tohsato Y, Baba T, Mazaki Y, Ito M, Wanner BL, Mori H.

J Bioinform Comput Biol. 2010 Dec;8 Suppl 1:83-99.

PMID:
21155021
[PubMed - indexed for MEDLINE]
12.

The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology.

Rajagopala SV, Yamamoto N, Zweifel AE, Nakamichi T, Huang HK, Mendez-Rios JD, Franca-Koh J, Boorgula MP, Fujita K, Suzuki K, Hu JC, Wanner BL, Mori H, Uetz P.

BMC Genomics. 2010 Aug 11;11:470. doi: 10.1186/1471-2164-11-470.

PMID:
20701780
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Transcription, processing and function of CRISPR cassettes in Escherichia coli.

Pougach K, Semenova E, Bogdanova E, Datsenko KA, Djordjevic M, Wanner BL, Severinov K.

Mol Microbiol. 2010 Sep;77(6):1367-79. doi: 10.1111/j.1365-2958.2010.07265.x.

PMID:
20624226
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Stochastic kinetic model of two component system signalling reveals all-or-none, graded and mixed mode stochastic switching responses.

Kierzek AM, Zhou L, Wanner BL.

Mol Biosyst. 2010 Mar;6(3):531-42. doi: 10.1039/b906951h. Epub 2009 Dec 2.

PMID:
20174681
[PubMed - indexed for MEDLINE]
15.

Global regulation by the seven-component Pi signaling system.

Hsieh YJ, Wanner BL.

Curr Opin Microbiol. 2010 Apr;13(2):198-203. doi: 10.1016/j.mib.2010.01.014. Epub 2010 Feb 18. Review.

PMID:
20171928
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Update on the Keio collection of Escherichia coli single-gene deletion mutants.

Yamamoto N, Nakahigashi K, Nakamichi T, Yoshino M, Takai Y, Touda Y, Furubayashi A, Kinjyo S, Dose H, Hasegawa M, Datsenko KA, Nakayashiki T, Tomita M, Wanner BL, Mori H.

Mol Syst Biol. 2009;5:335. doi: 10.1038/msb.2009.92. Epub 2009 Dec 22. No abstract available.

PMID:
20029369
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evidence against the physiological role of acetyl phosphate in the phosphorylation of the ArcA response regulator in Escherichia coli.

Liu X, Peña Sandoval GR, Wanner BL, Jung WS, Georgellis D, Kwon O.

J Microbiol. 2009 Oct;47(5):657-62. doi: 10.1007/s12275-009-0087-9. Epub 2009 Oct 24.

PMID:
19851741
[PubMed - indexed for MEDLINE]
18.

Genome-wide screens: novel mechanisms in colicin import and cytotoxicity.

Sharma O, Datsenko KA, Ess SC, Zhalnina MV, Wanner BL, Cramer WA.

Mol Microbiol. 2009 Aug;73(4):571-85. doi: 10.1111/j.1365-2958.2009.06788.x. Epub 2009 Jul 22.

PMID:
19650773
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

In vivo recognition of Bacillus subtilis by desorption electrospray ionization mass spectrometry (DESI-MS).

Song Y, Talaty N, Datsenko K, Wanner BL, Cooks RG.

Analyst. 2009 May;134(5):838-41. doi: 10.1039/b900069k. Epub 2009 Mar 16.

PMID:
19381372
[PubMed - indexed for MEDLINE]
20.

High-throughput, quantitative analyses of genetic interactions in E. coli.

Typas A, Nichols RJ, Siegele DA, Shales M, Collins SR, Lim B, Braberg H, Yamamoto N, Takeuchi R, Wanner BL, Mori H, Weissman JS, Krogan NJ, Gross CA.

Nat Methods. 2008 Sep;5(9):781-7.

PMID:
19160513
[PubMed - indexed for MEDLINE]
Free PMC Article

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