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Results: 1 to 20 of 88

1.

MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins.

Potenza E, Domenico TD, Walsh I, Tosatto SC.

Nucleic Acids Res. 2014 Oct 31. pii: gku982. [Epub ahead of print]

PMID:
25361972
[PubMed - as supplied by publisher]
Free Article
2.

Comprehensive large-scale assessment of intrinsic protein disorder.

Walsh I, Giollo M, Di Domenico T, Ferrari C, Zimmermann O, Tosatto SC.

Bioinformatics. 2014 Sep 21. pii: btu625. [Epub ahead of print]

PMID:
25246432
[PubMed - as supplied by publisher]
3.

Effect of acute swim stress on plasma corticosterone and brain monoamine levels in bidirectionally selected DxH recombinant inbred mouse strains differing in fear recall and extinction.

Browne CA, Hanke J, Rose C, Walsh I, Foley T, Clarke G, Schwegler H, Cryan JF, Yilmazer-Hanke D.

Stress. 2014 Dec;17(6):471-83. doi: 10.3109/10253890.2014.954104.

PMID:
25117886
[PubMed - in process]
4.

NeEMO: a method using residue interaction networks to improve prediction of protein stability upon mutation.

Giollo M, Martin AJ, Walsh I, Ferrari C, Tosatto SC.

BMC Genomics. 2014;15 Suppl 4:S7. doi: 10.1186/1471-2164-15-S4-S7. Epub 2014 May 20.

PMID:
25057121
[PubMed - in process]
Free PMC Article
5.

PASTA 2.0: an improved server for protein aggregation prediction.

Walsh I, Seno F, Tosatto SC, Trovato A.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W301-7. doi: 10.1093/nar/gku399. Epub 2014 May 21.

PMID:
24848016
[PubMed - indexed for MEDLINE]
Free Article
6.

Lung function and six-minute walk test performance in individuals with sickle cell disease.

Ohara DG, Ruas G, Walsh IA, Castro SS, Jamami M.

Braz J Phys Ther. 2014 Jan-Feb;18(1):79-87.

PMID:
24675916
[PubMed - in process]
Free PMC Article
7.

Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks.

Kukic P, Mirabello C, Tradigo G, Walsh I, Veltri P, Pollastri G.

BMC Bioinformatics. 2014 Jan 10;15:6. doi: 10.1186/1471-2105-15-6.

PMID:
24410833
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Submersible optical sensors exposed to chemically dispersed crude oil: wave tank simulations for improved oil spill monitoring.

Conmy RN, Coble PG, Farr J, Wood AM, Lee K, Pegau WS, Walsh ID, Koch CR, Abercrombie MI, Miles MS, Lewis MR, Ryan SA, Robinson BJ, King TL, Kelble CR, Lacoste J.

Environ Sci Technol. 2014 Feb 4;48(3):1803-10. doi: 10.1021/es404206y. Epub 2014 Jan 14.

PMID:
24377909
[PubMed - in process]
9.

RUBI: rapid proteomic-scale prediction of lysine ubiquitination and factors influencing predictor performance.

Walsh I, Di Domenico T, Tosatto SC.

Amino Acids. 2014 Apr;46(4):853-62. doi: 10.1007/s00726-013-1645-3. Epub 2013 Dec 23.

PMID:
24363213
[PubMed - in process]
10.

RepeatsDB: a database of tandem repeat protein structures.

Di Domenico T, Potenza E, Walsh I, Parra RG, Giollo M, Minervini G, Piovesan D, Ihsan A, Ferrari C, Kajava AV, Tosatto SC.

Nucleic Acids Res. 2014 Jan;42(Database issue):D352-7. doi: 10.1093/nar/gkt1175. Epub 2013 Dec 5.

PMID:
24311564
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

PANADA: protein association network annotation, determination and analysis.

Martin AJ, Walsh I, Domenico TD, Mičetić I, Tosatto SC.

PLoS One. 2013 Nov 12;8(11):e78383. doi: 10.1371/journal.pone.0078383. eCollection 2013.

PMID:
24265686
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Relationship of musculoskeletal pain with physical and functional variables and with postural changes in school children from 6 to 12 years of age.

Pereira DS, Castro SS, Bertoncello D, Damião R, Walsh IA.

Braz J Phys Ther. 2013 Jul-Aug;17(4):392-400. doi: 10.1590/S1413-35552013005000106. English, Portuguese.

PMID:
24037241
[PubMed - indexed for MEDLINE]
Free Article
13.

Bladder continence management in adult acquired brain injury.

Caldwell SB, Wilson JS, Smith D, McCann JP, Walsh IK.

Disabil Rehabil. 2014;36(11):959-62. doi: 10.3109/09638288.2013.824030. Epub 2013 Aug 14.

PMID:
23944178
[PubMed - in process]
14.

Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database.

Di Domenico T, Walsh I, Tosatto SC.

BMC Bioinformatics. 2013;14 Suppl 7:S3. doi: 10.1186/1471-2105-14-S7-S3. Epub 2013 Apr 22.

PMID:
23815411
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

RAPHAEL: recognition, periodicity and insertion assignment of solenoid protein structures.

Walsh I, Sirocco FG, Minervini G, Di Domenico T, Ferrari C, Tosatto SC.

Bioinformatics. 2012 Dec 15;28(24):3257-64. doi: 10.1093/bioinformatics/bts550. Epub 2012 Sep 8.

PMID:
22962341
[PubMed - indexed for MEDLINE]
Free Article
16.

Musculoskeletal pain, profile and quality of life of individuals with sickle cell disease.

Ohara DG, Ruas G, Castro SS, Martins PR, Walsh IA.

Rev Bras Fisioter. 2012 Sep-Oct;16(5):431-8. Epub 2012 Aug 9. English, Portuguese.

PMID:
22886311
[PubMed - indexed for MEDLINE]
Free Article
17.

Bluues server: electrostatic properties of wild-type and mutated protein structures.

Walsh I, Minervini G, Corazza A, Esposito G, Tosatto SC, Fogolari F.

Bioinformatics. 2012 Aug 15;28(16):2189-90. doi: 10.1093/bioinformatics/bts343. Epub 2012 Jun 17.

PMID:
22711791
[PubMed - indexed for MEDLINE]
Free Article
18.

MobiDB: a comprehensive database of intrinsic protein disorder annotations.

Di Domenico T, Walsh I, Martin AJ, Tosatto SC.

Bioinformatics. 2012 Aug 1;28(15):2080-1. doi: 10.1093/bioinformatics/bts327. Epub 2012 Jun 1.

PMID:
22661649
[PubMed - indexed for MEDLINE]
Free Article
19.

ESpritz: accurate and fast prediction of protein disorder.

Walsh I, Martin AJ, Di Domenico T, Tosatto SC.

Bioinformatics. 2012 Feb 15;28(4):503-9. doi: 10.1093/bioinformatics/btr682. Epub 2011 Dec 20.

PMID:
22190692
[PubMed - indexed for MEDLINE]
Free Article
20.

In silico protein motif discovery and structural analysis.

Mooney C, Davey N, Martin AJ, Walsh I, Shields DC, Pollastri G.

Methods Mol Biol. 2011;760:341-53. doi: 10.1007/978-1-61779-176-5_21.

PMID:
21780007
[PubMed - indexed for MEDLINE]

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