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Items: 18


Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies.

Bliss BJ, Wanke S, Barakat A, Ayyampalayam S, Wickett N, Wall PK, Jiao Y, Landherr L, Ralph PE, Hu Y, Neinhuis C, Leebens-Mack J, Arumuganathan K, Clifton SW, Maximova SN, Ma H, dePamphilis CW.

BMC Plant Biol. 2013 Jan 24;13:13. doi: 10.1186/1471-2229-13-13.


Conservation and canalization of gene expression during angiosperm diversification accompany the origin and evolution of the flower.

Chanderbali AS, Yoo MJ, Zahn LM, Brockington SF, Wall PK, Gitzendanner MA, Albert VA, Leebens-Mack J, Altman NS, Ma H, dePamphilis CW, Soltis DE, Soltis PS.

Proc Natl Acad Sci U S A. 2010 Dec 28;107(52):22570-5. doi: 10.1073/pnas.1013395108. Epub 2010 Dec 13.


Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies.

Zahn LM, Ma X, Altman NS, Zhang Q, Wall PK, Tian D, Gibas CJ, Gharaibeh R, Leebens-Mack JH, Depamphilis CW, Ma H.

Genome Biol. 2010;11(10):R101. doi: 10.1186/gb-2010-11-10-r101. Epub 2010 Oct 15.


Shotgun proteomic analysis of yeast-elicited California poppy (Eschscholzia californica) suspension cultures producing enhanced levels of benzophenanthridine alkaloids.

Oldham JT, Hincapie M, Rejtar T, Wall PK, Carlson JE, Lee-Parsons CW.

J Proteome Res. 2010 Sep 3;9(9):4337-45. doi: 10.1021/pr1000412.


Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels.

Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires JC, Leebens-Mack J, dePamphilis CW.

BMC Evol Biol. 2010 Feb 24;10:61. doi: 10.1186/1471-2148-10-61.


Towards improved reconstruction of ancestral gene order in angiosperm phylogeny.

Sankoff D, Zheng C, Wall PK, dePamphilis C, Leebens-Mack J, Albert VA.

J Comput Biol. 2009 Oct;16(10):1353-67. doi: 10.1089/cmb.2009.0103.


Comparison of next generation sequencing technologies for transcriptome characterization.

Wall PK, Leebens-Mack J, Chanderbali AS, Barakat A, Wolcott E, Liang H, Landherr L, Tomsho LP, Hu Y, Carlson JE, Ma H, Schuster SC, Soltis DE, Soltis PS, Altman N, dePamphilis CW.

BMC Genomics. 2009 Aug 1;10:347. doi: 10.1186/1471-2164-10-347.


Evolution of plant MADS box transcription factors: evidence for shifts in selection associated with early angiosperm diversification and concerted gene duplications.

Shan H, Zahn L, Guindon S, Wall PK, Kong H, Ma H, DePamphilis CW, Leebens-Mack J.

Mol Biol Evol. 2009 Oct;26(10):2229-44. doi: 10.1093/molbev/msp129. Epub 2009 Jul 3.


Polyploidy and angiosperm diversification.

Soltis DE, Albert VA, Leebens-Mack J, Bell CD, Paterson AH, Zheng C, Sankoff D, Depamphilis CW, Wall PK, Soltis PS.

Am J Bot. 2009 Jan;96(1):336-48. doi: 10.3732/ajb.0800079.


The Amborella genome: an evolutionary reference for plant biology.

Soltis DE, Albert VA, Leebens-Mack J, Palmer JD, Wing RA, dePamphilis CW, Ma H, Carlson JE, Altman N, Kim S, Wall PK, Zuccolo A, Soltis PS.

Genome Biol. 2008;9(3):402. doi: 10.1186/gb-2008-9-3-402. Epub 2008 Mar 10.


Conservation and divergence of microRNAs in Populus.

Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE.

BMC Genomics. 2007 Dec 31;8:481. doi: 10.1186/1471-2164-8-481.


The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral populus diploid.

Zheng C, Wall PK, Leebens-Mack J, Albert VA, dePamphilis C, Sankoff D.

Comput Syst Bioinformatics Conf. 2008;7:261-71.


PlantTribes: a gene and gene family resource for comparative genomics in plants.

Wall PK, Leebens-Mack J, Müller KF, Field D, Altman NS, dePamphilis CW.

Nucleic Acids Res. 2008 Jan;36(Database issue):D970-6. Epub 2007 Dec 10.


EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot.

Carlson JE, Leebens-Mack JH, Wall PK, Zahn LM, Mueller LA, Landherr LL, Hu Y, Ilut DC, Arrington JM, Choirean S, Becker A, Field D, Tanksley SD, Ma H, dePamphilis CW.

Plant Mol Biol. 2006 Oct;62(3):351-69. Epub 2006 Aug 17.


Widespread genome duplications throughout the history of flowering plants.

Cui L, Wall PK, Leebens-Mack JH, Lindsay BG, Soltis DE, Doyle JJ, Soltis PS, Carlson JE, Arumuganathan K, Barakat A, Albert VA, Ma H, dePamphilis CW.

Genome Res. 2006 Jun;16(6):738-49. Epub 2006 May 15.


Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries.

Wang JP, Lindsay BG, Cui L, Wall PK, Marion J, Zhang J, dePamphilis CW.

BMC Bioinformatics. 2005 Dec 13;6:300.


Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.

Duarte JM, Cui L, Wall PK, Zhang Q, Zhang X, Leebens-Mack J, Ma H, Altman N, dePamphilis CW.

Mol Biol Evol. 2006 Feb;23(2):469-78. Epub 2005 Nov 9.


Floral gene resources from basal angiosperms for comparative genomics research.

Albert VA, Soltis DE, Carlson JE, Farmerie WG, Wall PK, Ilut DC, Solow TM, Mueller LA, Landherr LL, Hu Y, Buzgo M, Kim S, Yoo MJ, Frohlich MW, Perl-Treves R, Schlarbaum SE, Bliss BJ, Zhang X, Tanksley SD, Oppenheimer DG, Soltis PS, Ma H, DePamphilis CW, Leebens-Mack JH.

BMC Plant Biol. 2005 Mar 30;5:5.

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