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Results: 1 to 20 of 151

1.

A Post-Genomic View of the Ecophysiology, Catabolism and Biotechnological Relevance of Sulphate-Reducing Prokaryotes.

Rabus R, Venceslau SS, Wöhlbrand L, Voordouw G, Wall JD, Pereira IA.

Adv Microb Physiol. 2015;66:55-321. doi: 10.1016/bs.ampbs.2015.05.002. Epub 2015 Jul 9.

PMID:
26210106
2.

Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris.

Zhou A, Hillesland KL, He Z, Schackwitz W, Tu Q, Zane GM, Ma Q, Qu Y, Stahl DA, Wall JD, Hazen TC, Fields MW, Arkin AP, Zhou J.

ISME J. 2015 Apr 7. doi: 10.1038/ismej.2015.45. [Epub ahead of print]

PMID:
25848870
3.

Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate bayesian computation approach.

Veeramah KR, Woerner AE, Johnstone L, Gut I, Gut M, Marques-Bonet T, Carbone L, Wall JD, Hammer MF.

Genetics. 2015 May;200(1):295-308. doi: 10.1534/genetics.115.174425. Epub 2015 Mar 12.

PMID:
25769979
4.

Site-directed mutagenesis of HgcA and HgcB reveals amino acid residues important for mercury methylation.

Smith SD, Bridou R, Johs A, Parks JM, Elias DA, Hurt RA Jr, Brown SD, Podar M, Wall JD.

Appl Environ Microbiol. 2015 May 1;81(9):3205-17. doi: 10.1128/AEM.00217-15. Epub 2015 Feb 27.

PMID:
25724962
5.

Sulfur isotope fractionation during the evolutionary adaptation of a sulfate-reducing bacterium.

Pellerin A, Anderson-Trocmé L, Whyte LG, Zane GM, Wall JD, Wing BA.

Appl Environ Microbiol. 2015 Apr;81(8):2676-89. doi: 10.1128/AEM.03476-14. Epub 2015 Feb 6.

PMID:
25662968
6.

Biofilm growth mode promotes maximum carrying capacity and community stability during product inhibition syntrophy.

Brileya KA, Camilleri LB, Zane GM, Wall JD, Fields MW.

Front Microbiol. 2014 Dec 15;5:693. doi: 10.3389/fmicb.2014.00693. eCollection 2014.

7.

Independence of nitrate and nitrite inhibition of Desulfovibrio vulgaris Hildenborough and use of nitrite as a substrate for growth.

Korte HL, Saini A, Trotter VV, Butland GP, Arkin AP, Wall JD.

Environ Sci Technol. 2015 Jan 20;49(2):924-31.

PMID:
25534748
8.

Inference of gorilla demographic and selective history from whole-genome sequence data.

McManus KF, Kelley JL, Song S, Veeramah KR, Woerner AE, Stevison LS, Ryder OA, Ape Genome Project G, Kidd JM, Wall JD, Bustamante CD, Hammer MF.

Mol Biol Evol. 2015 Mar;32(3):600-12. doi: 10.1093/molbev/msu394. Epub 2014 Dec 21.

9.

Paleogenomics. Genomic structure in Europeans dating back at least 36,200 years.

Seguin-Orlando A, Korneliussen TS, Sikora M, Malaspinas AS, Manica A, Moltke I, Albrechtsen A, Ko A, Margaryan A, Moiseyev V, Goebel T, Westaway M, Lambert D, Khartanovich V, Wall JD, Nigst PR, Foley RA, Lahr MM, Nielsen R, Orlando L, Willerslev E.

Science. 2014 Nov 28;346(6213):1113-8. doi: 10.1126/science.aaa0114. Epub 2014 Nov 6.

PMID:
25378462
10.

The FlxABCD-HdrABC proteins correspond to a novel NADH dehydrogenase/heterodisulfide reductase widespread in anaerobic bacteria and involved in ethanol metabolism in Desulfovibrio vulgaris Hildenborough.

Ramos AR, Grein F, Oliveira GP, Venceslau SS, Keller KL, Wall JD, Pereira IA.

Environ Microbiol. 2015 Jul;17(7):2288-305. doi: 10.1111/1462-2920.12689. Epub 2015 Jan 27.

PMID:
25367508
11.

Rex (encoded by DVU_0916) in Desulfovibrio vulgaris Hildenborough is a repressor of sulfate adenylyl transferase and is regulated by NADH.

Christensen GA, Zane GM, Kazakov AE, Li X, Rodionov DA, Novichkov PS, Dubchak I, Arkin AP, Wall JD.

J Bacteriol. 2015 Jan 1;197(1):29-39. doi: 10.1128/JB.02083-14. Epub 2014 Oct 13.

12.

Estimating genotype error rates from high-coverage next-generation sequence data.

Wall JD, Tang LF, Zerbe B, Kvale MN, Kwok PY, Schaefer C, Risch N.

Genome Res. 2014 Nov;24(11):1734-9. doi: 10.1101/gr.168393.113. Epub 2014 Oct 10.

13.

Erosion of functional independence early in the evolution of a microbial mutualism.

Hillesland KL, Lim S, Flowers JJ, Turkarslan S, Pinel N, Zane GM, Elliott N, Qin Y, Wu L, Baliga NS, Zhou J, Wall JD, Stahl DA.

Proc Natl Acad Sci U S A. 2014 Oct 14;111(41):14822-7. doi: 10.1073/pnas.1407986111. Epub 2014 Sep 29.

14.

Gibbon genome and the fast karyotype evolution of small apes.

Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, Beal K, Blancher A, Bohrson CL, Brameier M, Campbell MS, Capozzi O, Casola C, Chiatante G, Cree A, Damert A, de Jong PJ, Dumas L, Fernandez-Callejo M, Flicek P, Fuchs NV, Gut I, Gut M, Hahn MW, Hernandez-Rodriguez J, Hillier LW, Hubley R, Ianc B, Izsvák Z, Jablonski NG, Johnstone LM, Karimpour-Fard A, Konkel MK, Kostka D, Lazar NH, Lee SL, Lewis LR, Liu Y, Locke DP, Mallick S, Mendez FL, Muffato M, Nazareth LV, Nevonen KA, O'Bleness M, Ochis C, Odom DT, Pollard KS, Quilez J, Reich D, Rocchi M, Schumann GG, Searle S, Sikela JM, Skollar G, Smit A, Sonmez K, ten Hallers B, Terhune E, Thomas GW, Ullmer B, Ventura M, Walker JA, Wall JD, Walter L, Ward MC, Wheelan SJ, Whelan CW, White S, Wilhelm LJ, Woerner AE, Yandell M, Zhu B, Hammer MF, Marques-Bonet T, Eichler EE, Fulton L, Fronick C, Muzny DM, Warren WC, Worley KC, Rogers J, Wilson RK, Gibbs RA.

Nature. 2014 Sep 11;513(7517):195-201. doi: 10.1038/nature13679.

15.

Identification of a cyclic-di-GMP-modulating response regulator that impacts biofilm formation in a model sulfate reducing bacterium.

Rajeev L, Luning EG, Altenburg S, Zane GM, Baidoo EE, Catena M, Keasling JD, Wall JD, Fields MW, Mukhopadhyay A.

Front Microbiol. 2014 Jul 29;5:382. doi: 10.3389/fmicb.2014.00382. eCollection 2014.

16.

Genetic basis for nitrate resistance in Desulfovibrio strains.

Korte HL, Fels SR, Christensen GA, Price MN, Kuehl JV, Zane GM, Deutschbauer AM, Arkin AP, Wall JD.

Front Microbiol. 2014 Apr 21;5:153. doi: 10.3389/fmicb.2014.00153. eCollection 2014.

17.

Exome capture from saliva produces high quality genomic and metagenomic data.

Kidd JM, Sharpton TJ, Bobo D, Norman PJ, Martin AR, Carpenter ML, Sikora M, Gignoux CR, Nemat-Gorgani N, Adams A, Guadalupe M, Guo X, Feng Q, Li Y, Liu X, Parham P, Hoal EG, Feldman MW, Pollard KS, Wall JD, Bustamante CD, Henn BM.

BMC Genomics. 2014 Apr 4;15:262. doi: 10.1186/1471-2164-15-262.

18.

Exploring the role of CheA3 in Desulfovibrio vulgaris Hildenborough motility.

Ray J, Keller KL, Catena M, Juba TR, Zemla M, Rajeev L, Knierim B, Zane GM, Robertson JJ, Auer M, Wall JD, Mukhopadhyay A.

Front Microbiol. 2014 Mar 6;5:77. doi: 10.3389/fmicb.2014.00077. eCollection 2014.

19.

New model for electron flow for sulfate reduction in Desulfovibrio alaskensis G20.

Keller KL, Rapp-Giles BJ, Semkiw ES, Porat I, Brown SD, Wall JD.

Appl Environ Microbiol. 2014 Feb;80(3):855-68. doi: 10.1128/AEM.02963-13. Epub 2013 Nov 15.

20.

Great ape genomics.

Wall JD.

ILAR J. 2013;54(2):82-90. doi: 10.1093/ilar/ilt048. Review.

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