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Results: 1 to 20 of 136

1.

Genetic basis for nitrate resistance in Desulfovibrio strains.

Korte HL, Fels SR, Christensen GA, Price MN, Kuehl JV, Zane GM, Deutschbauer AM, Arkin AP, Wall JD.

Front Microbiol. 2014 Apr 21;5:153. doi: 10.3389/fmicb.2014.00153. eCollection 2014.

PMID:
24795702
[PubMed]
Free PMC Article
2.

Exome capture from saliva produces high quality genomic and metagenomic data.

Kidd JM, Sharpton TJ, Bobo D, Norman PJ, Martin AR, Carpenter ML, Sikora M, Gignoux CR, Nemat-Gorgani N, Adams A, Guadalupe M, Guo X, Feng Q, Li Y, Liu X, Parham P, Hoal EG, Feldman MW, Pollard KS, Wall JD, Bustamante CD, Henn BM.

BMC Genomics. 2014 Apr 4;15:262. doi: 10.1186/1471-2164-15-262.

PMID:
24708091
[PubMed - in process]
Free PMC Article
3.

Exploring the role of CheA3 in Desulfovibrio vulgaris Hildenborough motility.

Ray J, Keller KL, Catena M, Juba TR, Zemla M, Rajeev L, Knierim B, Zane GM, Robertson JJ, Auer M, Wall JD, Mukhopadhyay A.

Front Microbiol. 2014 Mar 6;5:77. doi: 10.3389/fmicb.2014.00077. eCollection 2014.

PMID:
24639670
[PubMed]
Free PMC Article
4.

New model for electron flow for sulfate reduction in Desulfovibrio alaskensis G20.

Keller KL, Rapp-Giles BJ, Semkiw ES, Porat I, Brown SD, Wall JD.

Appl Environ Microbiol. 2014 Feb;80(3):855-68. doi: 10.1128/AEM.02963-13. Epub 2013 Nov 15.

PMID:
24242254
[PubMed - in process]
5.

Great ape genomics.

Wall JD.

ILAR J. 2013;54(2):82-90. doi: 10.1093/ilar/ilt048. Review.

PMID:
24174434
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Rapid transposon liquid enrichment sequencing (TnLE-seq) for gene fitness evaluation in underdeveloped bacterial systems.

Fels SR, Zane GM, Blake SM, Wall JD.

Appl Environ Microbiol. 2013 Dec;79(23):7510-7. doi: 10.1128/AEM.02051-13. Epub 2013 Sep 27.

PMID:
24077707
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

New family of tungstate-responsive transcriptional regulators in sulfate-reducing bacteria.

Kazakov AE, Rajeev L, Luning EG, Zane GM, Siddartha K, Rodionov DA, Dubchak I, Arkin AP, Wall JD, Mukhopadhyay A, Novichkov PS.

J Bacteriol. 2013 Oct;195(19):4466-75. doi: 10.1128/JB.00679-13. Epub 2013 Aug 2.

PMID:
23913324
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Membrane protein complex of APS reductase and Qmo is present in Desulfovibrio vulgaris and Desulfovibrio alaskensis.

Krumholz LR, Wang L, Beck DA, Wang T, Hackett M, Mooney B, Juba TR, McInerney MJ, Meyer B, Wall JD, Stahl DA.

Microbiology. 2013 Oct;159(Pt 10):2162-8. doi: 10.1099/mic.0.063818-0. Epub 2013 Jul 10.

PMID:
23842468
[PubMed - indexed for MEDLINE]
9.

Great ape genetic diversity and population history.

Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernandez-Rodriguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernandez-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Mele M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilsom C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE, Marques-Bonet T.

Nature. 2013 Jul 25;499(7459):471-5. doi: 10.1038/nature12228. Epub 2013 Jul 3.

PMID:
23823723
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Fractionation of sulfur isotopes by Desulfovibrio vulgaris mutants lacking hydrogenases or type I tetraheme cytochrome c 3.

Sim MS, Wang DT, Zane GM, Wall JD, Bosak T, Ono S.

Front Microbiol. 2013 Jun 25;4:171. doi: 10.3389/fmicb.2013.00171. eCollection 2013.

PMID:
23805134
[PubMed]
Free PMC Article
11.

A comparison of nanosilver and silver ion effects on bioreactor landfill operations and methanogenic population dynamics.

Yang Y, Gajaraj S, Wall JD, Hu Z.

Water Res. 2013 Jun 15;47(10):3422-30. doi: 10.1016/j.watres.2013.03.040. Epub 2013 Apr 6.

PMID:
23602615
[PubMed - indexed for MEDLINE]
12.

Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution.

Zhou A, Baidoo E, He Z, Mukhopadhyay A, Baumohl JK, Benke P, Joachimiak MP, Xie M, Song R, Arkin AP, Hazen TC, Keasling JD, Wall JD, Stahl DA, Zhou J.

ISME J. 2013 Sep;7(9):1790-802. doi: 10.1038/ismej.2013.60. Epub 2013 Apr 11.

PMID:
23575373
[PubMed - indexed for MEDLINE]
13.

Hybrid cluster proteins and flavodiiron proteins afford protection to Desulfovibrio vulgaris upon macrophage infection.

Figueiredo MC, Lobo SA, Sousa SH, Pereira FP, Wall JD, Nobre LS, Saraiva LM.

J Bacteriol. 2013 Jun;195(11):2684-90. doi: 10.1128/JB.00074-13. Epub 2013 Apr 5.

PMID:
23564166
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Multiple instances of ancient balancing selection shared between humans and chimpanzees.

Leffler EM, Gao Z, Pfeifer S, Ségurel L, Auton A, Venn O, Bowden R, Bontrop R, Wall JD, Sella G, Donnelly P, McVean G, Przeworski M.

Science. 2013 Mar 29;339(6127):1578-82. doi: 10.1126/science.1234070. Epub 2013 Feb 14.

PMID:
23413192
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Higher levels of neanderthal ancestry in East Asians than in Europeans.

Wall JD, Yang MA, Jay F, Kim SK, Durand EY, Stevison LS, Gignoux C, Woerner A, Hammer MF, Slatkin M.

Genetics. 2013 May;194(1):199-209. doi: 10.1534/genetics.112.148213. Epub 2013 Feb 14.

PMID:
23410836
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The genetic basis for bacterial mercury methylation.

Parks JM, Johs A, Podar M, Bridou R, Hurt RA Jr, Smith SD, Tomanicek SJ, Qian Y, Brown SD, Brandt CC, Palumbo AV, Smith JC, Wall JD, Elias DA, Liang L.

Science. 2013 Mar 15;339(6125):1332-5. doi: 10.1126/science.1230667. Epub 2013 Feb 7.

PMID:
23393089
[PubMed - indexed for MEDLINE]
Free Article
17.

Function and regulation of AUTS2, a gene implicated in autism and human evolution.

Oksenberg N, Stevison L, Wall JD, Ahituv N.

PLoS Genet. 2013;9(1):e1003221. doi: 10.1371/journal.pgen.1003221. Epub 2013 Jan 17.

PMID:
23349641
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Incomplete lineage sorting is common in extant gibbon genera.

Wall JD, Kim SK, Luca F, Carbone L, Mootnick AR, de Jong PJ, Di Rienzo A.

PLoS One. 2013;8(1):e53682. doi: 10.1371/journal.pone.0053682. Epub 2013 Jan 14.

PMID:
23341974
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Population genetic structure and origins of Native Hawaiians in the multiethnic cohort study.

Kim SK, Gignoux CR, Wall JD, Lum-Jones A, Wang H, Haiman CA, Chen GK, Henderson BE, Kolonel LN, Le Marchand L, Stram DO, Saxena R, Cheng I.

PLoS One. 2012;7(11):e47881. doi: 10.1371/journal.pone.0047881. Epub 2012 Nov 7.

PMID:
23144833
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Paleopopulation genetics.

Wall JD, Slatkin M.

Annu Rev Genet. 2012;46:635-49. doi: 10.1146/annurev-genet-110711-155557. Epub 2012 Sep 17. Review.

PMID:
22994357
[PubMed - indexed for MEDLINE]

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