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Items: 1 to 20 of 167

1.

Development and Validation of Broad-Range Qualitative and Clade-Specific Quantitative Molecular Probes for Assessing Mercury Methylation in the Environment.

Christensen GA, Wymore AM, King AJ, Podar M, Hurt RA Jr, Santillan EU, Soren A, Brandt CC, Brown SD, Palumbo AV, Wall JD, Gilmour CC, Elias DA.

Appl Environ Microbiol. 2016 Jul 15. pii: AEM.01271-16. [Epub ahead of print]

2.

Electron transfer pathways of formate-driven H2 production in Desulfovibrio.

Martins M, Mourato C, Morais-Silva FO, Rodrigues-Pousada C, Voordouw G, Wall JD, Pereira IA.

Appl Microbiol Biotechnol. 2016 Jun 7. [Epub ahead of print]

PMID:
27270746
3.

Detecting Recombination Hotspots from Patterns of Linkage Disequilibrium.

Wall JD, Stevison LS.

G3 (Bethesda). 2016 May 25. pii: g3.116.029587. doi: 10.1534/g3.116.029587. [Epub ahead of print]

4.

Corrigendum: Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies.

Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF.

Genome Res. 2016 May;26(5):717.1. doi: 10.1101/gr.206524.116. No abstract available.

5.

A hybrid approach for de novo human genome sequence assembly and phasing.

Mostovoy Y, Levy-Sakin M, Lam J, Lam ET, Hastie AR, Marks P, Lee J, Chu C, Lin C, Džakula Ž, Cao H, Schlebusch SA, Giorda K, Schnall-Levin M, Wall JD, Kwok PY.

Nat Methods. 2016 Jul;13(7):587-90. doi: 10.1038/nmeth.3865. Epub 2016 May 9.

PMID:
27159086
6.

Genomewide ancestry and divergence patterns from low-coverage sequencing data reveal a complex history of admixture in wild baboons.

Wall JD, Schlebusch SA, Alberts SC, Cox LA, Snyder-Mackler N, Nevonen KA, Carbone L, Tung J.

Mol Ecol. 2016 Jul;25(14):3469-83. doi: 10.1111/mec.13684. Epub 2016 Jun 15.

PMID:
27145036
7.

Efficient Genome-Wide Sequencing and Low-Coverage Pedigree Analysis from Noninvasively Collected Samples.

Snyder-Mackler N, Majoros WH, Yuan ML, Shaver AO, Gordon JB, Kopp GH, Schlebusch SA, Wall JD, Alberts SC, Mukherjee S, Zhou X, Tung J.

Genetics. 2016 Jun;203(2):699-714. doi: 10.1534/genetics.116.187492. Epub 2016 Apr 20.

8.

Global Isotope Metabolomics Reveals Adaptive Strategies for Nitrogen Assimilation.

Kurczy ME, Forsberg EM, Thorgersen MP, Poole FL 2nd, Benton HP, Ivanisevic J, Tran ML, Wall JD, Elias DA, Adams MW, Siuzdak G.

ACS Chem Biol. 2016 Jun 17;11(6):1677-85. doi: 10.1021/acschembio.6b00082. Epub 2016 Apr 8.

PMID:
27045776
9.

Transcriptomic and epigenomic characterization of the developing bat wing.

Eckalbar WL, Schlebusch SA, Mason MK, Gill Z, Parker AV, Booker BM, Nishizaki S, Muswamba-Nday C, Terhune E, Nevonen KA, Makki N, Friedrich T, VanderMeer JE, Pollard KS, Carbone L, Wall JD, Illing N, Ahituv N.

Nat Genet. 2016 May;48(5):528-36. doi: 10.1038/ng.3537. Epub 2016 Mar 28.

PMID:
27019111
10.

Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies.

Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF.

Genome Res. 2016 Mar;26(3):291-300. doi: 10.1101/gr.196634.115. Epub 2016 Feb 17. Erratum in: Genome Res. 2016 May;26(5):717.1.

PMID:
26888264
11.

Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection.

Hsieh P, Veeramah KR, Lachance J, Tishkoff SA, Wall JD, Hammer MF, Gutenkunst RN.

Genome Res. 2016 Mar;26(3):279-90. doi: 10.1101/gr.192971.115. Epub 2016 Feb 17.

PMID:
26888263
12.

Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported.

Shatsky M, Allen S, Gold BL, Liu NL, Juba TR, Reveco SA, Elias DA, Prathapam R, He J, Yang W, Szakal ED, Liu H, Singer ME, Geller JT, Lam BR, Saini A, Trotter VV, Hall SC, Fisher SJ, Brenner SE, Chhabra SR, Hazen TC, Wall JD, Witkowska HE, Biggin MD, Chandonia JM, Butland G.

Mol Cell Proteomics. 2016 May;15(5):1539-55. doi: 10.1074/mcp.M115.054692. Epub 2016 Feb 12.

PMID:
26873250
13.

Solids Retention Time Dependent Phototrophic Growth and Population Changes in Chemostat Cultivation Using Wastewater.

Shen Q, Wall JD, Hu Z.

Water Environ Res. 2016 Jan;88(1):5-12. doi: 10.2175/106143014X13975035526103.

PMID:
26803021
14.

The Time Scale of Recombination Rate Evolution in Great Apes.

Stevison LS, Woerner AE, Kidd JM, Kelley JL, Veeramah KR, McManus KF; Great Ape Genome Project, Bustamante CD, Hammer MF, Wall JD.

Mol Biol Evol. 2016 Apr;33(4):928-45. doi: 10.1093/molbev/msv331. Epub 2015 Dec 15.

PMID:
26671457
15.

Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum.

De León KB, Utturkar SM, Camilleri LB, Elias DA, Arkin AP, Fields MW, Brown SD, Wall JD.

Genome Announc. 2015 Sep 24;3(5). pii: e01090-15. doi: 10.1128/genomeA.01090-15.

16.

Regulation of Nitrite Stress Response in Desulfovibrio vulgaris Hildenborough, a Model Sulfate-Reducing Bacterium.

Rajeev L, Chen A, Kazakov AE, Luning EG, Zane GM, Novichkov PS, Wall JD, Mukhopadhyay A.

J Bacteriol. 2015 Nov;197(21):3400-8. doi: 10.1128/JB.00319-15. Epub 2015 Aug 17.

17.

A Post-Genomic View of the Ecophysiology, Catabolism and Biotechnological Relevance of Sulphate-Reducing Prokaryotes.

Rabus R, Venceslau SS, Wöhlbrand L, Voordouw G, Wall JD, Pereira IA.

Adv Microb Physiol. 2015;66:55-321. doi: 10.1016/bs.ampbs.2015.05.002. Epub 2015 Jul 9. Review.

PMID:
26210106
18.

Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris.

Zhou A, Hillesland KL, He Z, Schackwitz W, Tu Q, Zane GM, Ma Q, Qu Y, Stahl DA, Wall JD, Hazen TC, Fields MW, Arkin AP, Zhou J.

ISME J. 2015 Nov;9(11):2360-72. doi: 10.1038/ismej.2015.45. Epub 2015 Apr 7.

PMID:
25848870
19.

Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate bayesian computation approach.

Veeramah KR, Woerner AE, Johnstone L, Gut I, Gut M, Marques-Bonet T, Carbone L, Wall JD, Hammer MF.

Genetics. 2015 May;200(1):295-308. doi: 10.1534/genetics.115.174425. Epub 2015 Mar 12.

20.

Site-directed mutagenesis of HgcA and HgcB reveals amino acid residues important for mercury methylation.

Smith SD, Bridou R, Johs A, Parks JM, Elias DA, Hurt RA Jr, Brown SD, Podar M, Wall JD.

Appl Environ Microbiol. 2015 May 1;81(9):3205-17. doi: 10.1128/AEM.00217-15. Epub 2015 Feb 27.

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