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Results: 1 to 20 of 46

1.

COSMOS: Python library for massively parallel workflows.

Gafni E, Luquette LJ, Lancaster AK, Hawkins JB, Jung JY, Souilmi Y, Wall DP, Tonellato PJ.

Bioinformatics. 2014 Jun 30. pii: btu385. [Epub ahead of print]

PMID:
24982428
[PubMed - as supplied by publisher]
Free Article
2.

Evaluating the critical source area concept of phosphorus loss from soils to water-bodies in agricultural catchments.

Shore M, Jordan P, Mellander PE, Kelly-Quinn M, Wall DP, Murphy PN, Melland AR.

Sci Total Environ. 2014 Aug 15;490:405-15. doi: 10.1016/j.scitotenv.2014.04.122. Epub 2014 May 24.

PMID:
24863139
[PubMed - in process]
3.

The potential of accelerating early detection of autism through content analysis of YouTube videos.

Fusaro VA, Daniels J, Duda M, DeLuca TF, D'Angelo O, Tamburello J, Maniscalco J, Wall DP.

PLoS One. 2014 Apr 16;9(4):e93533. doi: 10.1371/journal.pone.0093533. eCollection 2014.

PMID:
24740236
[PubMed - in process]
Free PMC Article
4.

Genetic Networks of Complex Disorders: from a Novel Search Engine for PubMed Article Database.

Jung JY, Wall DP.

AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:99. eCollection 2013.

PMID:
24303309
[PubMed]
Free PMC Article
5.

A literature search tool for intelligent extraction of disease-associated genes.

Jung JY, DeLuca TF, Nelson TH, Wall DP.

J Am Med Inform Assoc. 2014 May-Jun;21(3):399-405. doi: 10.1136/amiajnl-2012-001563. Epub 2013 Sep 2.

PMID:
23999671
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Haplotype structure enables prioritization of common markers and candidate genes in autism spectrum disorder.

Vardarajan BN, Eran A, Jung JY, Kunkel LM, Wall DP.

Transl Psychiatry. 2013 May 28;3:e262. doi: 10.1038/tp.2013.38.

PMID:
23715297
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Quantification of phosphorus transport from a karstic agricultural watershed to emerging spring water.

Mellander PE, Jordan P, Melland AR, Murphy PN, Wall DP, Mechan S, Meehan R, Kelly C, Shine O, Shortle G.

Environ Sci Technol. 2013 Jun 18;47(12):6111-9. doi: 10.1021/es304909y. Epub 2013 May 28.

PMID:
23672730
[PubMed - indexed for MEDLINE]
8.

Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package.

El-Kalioby M, Abouelhoda M, Kr├╝ger J, Giegerich R, Sczyrba A, Wall DP, Tonellato P.

BMC Bioinformatics. 2012;13 Suppl 17:S22. doi: 10.1186/1471-2105-13-S17-S22. Epub 2012 Dec 13.

PMID:
23281941
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Autworks: a cross-disease network biology application for Autism and related disorders.

Nelson TH, Jung JY, Deluca TF, Hinebaugh BK, St Gabriel KC, Wall DP.

BMC Med Genomics. 2012 Nov 28;5:56. doi: 10.1186/1755-8794-5-56.

PMID:
23190929
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Cross-pollination of research findings, although uncommon, may accelerate discovery of human disease genes.

Duda M, Nelson T, Wall DP.

BMC Med Genet. 2012 Nov 28;13:114. doi: 10.1186/1471-2350-13-114.

PMID:
23190421
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Responding to a diagnosis of localized prostate cancer: men's experiences of normal distress during the first 3 postdiagnostic months.

Wall DP, Kristjanson LJ, Fisher C, Boldy D, Kendall GE.

Cancer Nurs. 2013 Nov-Dec;36(6):E44-50. doi: 10.1097/NCC.0b013e3182747bef.

PMID:
23154517
[PubMed - in process]
12.

Cloud computing for comparative genomics with windows azure platform.

Kim I, Jung JY, Deluca TF, Nelson TH, Wall DP.

Evol Bioinform Online. 2012;8:527-34. doi: 10.4137/EBO.S9946. Epub 2012 Aug 30.

PMID:
23032609
[PubMed]
Free PMC Article
13.

Use of artificial intelligence to shorten the behavioral diagnosis of autism.

Wall DP, Dally R, Luyster R, Jung JY, Deluca TF.

PLoS One. 2012;7(8):e43855. doi: 10.1371/journal.pone.0043855. Epub 2012 Aug 27.

PMID:
22952789
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Use of machine learning to shorten observation-based screening and diagnosis of autism.

Wall DP, Kosmicki J, Deluca TF, Harstad E, Fusaro VA.

Transl Psychiatry. 2012 Apr 10;2:e100. doi: 10.1038/tp.2012.10.

PMID:
22832900
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The future of genomics in pathology.

Wall DP, Tonellato PJ.

F1000 Med Rep. 2012;4:14. doi: 10.3410/M4-14. Epub 2012 Jul 2.

PMID:
22802873
[PubMed]
Free PMC Article
16.

Systems analysis of inflammatory bowel disease based on comprehensive gene information.

Suzuki S, Takai-Igarashi T, Fukuoka Y, Wall DP, Tanaka H, Tonellato PJ.

BMC Med Genet. 2012 Apr 5;13:25. doi: 10.1186/1471-2350-13-25.

PMID:
22480395
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Delivery and impact bypass in a karst aquifer with high phosphorus source and pathway potential.

Mellander PE, Jordan P, Wall DP, Melland AR, Meehan R, Kelly C, Shortle G.

Water Res. 2012 May 1;46(7):2225-36. doi: 10.1016/j.watres.2012.01.048. Epub 2012 Feb 9.

PMID:
22377147
[PubMed - indexed for MEDLINE]
18.

Roundup 2.0: enabling comparative genomics for over 1800 genomes.

DeLuca TF, Cui J, Jung JY, St Gabriel KC, Wall DP.

Bioinformatics. 2012 Mar 1;28(5):715-6. doi: 10.1093/bioinformatics/bts006. Epub 2012 Jan 13.

PMID:
22247275
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Phylogenetically informed logic relationships improve detection of biological network organization.

Cui J, DeLuca TF, Jung JY, Wall DP.

BMC Bioinformatics. 2011 Dec 15;12:476. doi: 10.1186/1471-2105-12-476.

PMID:
22172058
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Biomedical cloud computing with Amazon Web Services.

Fusaro VA, Patil P, Gafni E, Wall DP, Tonellato PJ.

PLoS Comput Biol. 2011 Aug;7(8):e1002147. doi: 10.1371/journal.pcbi.1002147. Epub 2011 Aug 25.

PMID:
21901085
[PubMed - indexed for MEDLINE]
Free PMC Article

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