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Items: 1 to 20 of 149

1.

Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation.

Nillegoda NB, Kirstein J, Szlachcic A, Berynskyy M, Stank A, Stengel F, Arnsburg K, Gao X, Scior A, Aebersold R, Guilbride DL, Wade RC, Morimoto RI, Mayer MP, Bukau B.

Nature. 2015 Aug 13;524(7564):247-51. doi: 10.1038/nature14884. Epub 2015 Aug 5.

PMID:
26245380
2.

SDA 7: A modular and parallel implementation of the simulation of diffusional association software.

Martinez M, Bruce NJ, Romanowska J, Kokh DB, Ozboyaci M, Yu X, Öztürk MA, Richter S, Wade RC.

J Comput Chem. 2015 Aug 5;36(21):1631-45. doi: 10.1002/jcc.23971. Epub 2015 Jun 29.

PMID:
26123630
3.

Kar1 binding to Sfi1 C-terminal regions anchors the SPB bridge to the nuclear envelope.

Seybold C, Elserafy M, Rüthnick D, Ozboyaci M, Neuner A, Flottmann B, Heilemann M, Wade RC, Schiebel E.

J Cell Biol. 2015 Jun 22;209(6):843-61. doi: 10.1083/jcb.201412050. Epub 2015 Jun 15.

PMID:
26076691
4.

A multiscale approach to simulating the conformational properties of unbound multi-C2 H2 zinc finger proteins.

Liu L, Wade RC, Heermann DW.

Proteins. 2015 Sep;83(9):1604-15. doi: 10.1002/prot.24845. Epub 2015 Jul 1.

PMID:
26062035
5.

webSDA: a web server to simulate macromolecular diffusional association.

Yu X, Martinez M, Gable AL, Fuller JC, Bruce NJ, Richter S, Wade RC.

Nucleic Acids Res. 2015 Jul 1;43(W1):W220-4. doi: 10.1093/nar/gkv335. Epub 2015 Apr 16.

6.

Hotspots in an obligate homodimeric anticancer target. Structural and functional effects of interfacial mutations in human thymidylate synthase.

Salo-Ahen OM, Tochowicz A, Pozzi C, Cardinale D, Ferrari S, Boum Y, Mangani S, Stroud RM, Saxena P, Myllykallio H, Costi MP, Ponterini G, Wade RC.

J Med Chem. 2015 Apr 23;58(8):3572-81. doi: 10.1021/acs.jmedchem.5b00137. Epub 2015 Apr 1.

PMID:
25798950
7.

Dynamics of CYP51: implications for function and inhibitor design.

Yu X, Cojocaru V, Mustafa G, Salo-Ahen OM, Lepesheva GI, Wade RC.

J Mol Recognit. 2015 Feb;28(2):59-73. doi: 10.1002/jmr.2412. Epub 2015 Jan 20.

PMID:
25601796
8.

LigDig: a web server for querying ligand-protein interactions.

Fuller JC, Martinez M, Henrich S, Stank A, Richter S, Wade RC.

Bioinformatics. 2015 Apr 1;31(7):1147-9. doi: 10.1093/bioinformatics/btu784. Epub 2014 Nov 29.

9.

On calculation of the electrostatic potential of a phosphatidylinositol phosphate-containing phosphatidylcholine lipid membrane accounting for membrane dynamics.

Fuller JC, Martinez M, Wade RC.

PLoS One. 2014 Aug 20;9(8):e104778. doi: 10.1371/journal.pone.0104778. eCollection 2014.

10.

Long range Debye-Hückel correction for computation of grid-based electrostatic forces between biomacromolecules.

Mereghetti P, Martinez M, Wade RC.

BMC Biophys. 2014 Jun 17;7:4. doi: 10.1186/2046-1682-7-4. eCollection 2014.

11.

GTP regulates the microtubule nucleation activity of γ-tubulin.

Gombos L, Neuner A, Berynskyy M, Fava LL, Wade RC, Sachse C, Schiebel E.

Nat Cell Biol. 2013 Nov;15(11):1317-27. doi: 10.1038/ncb2863. Epub 2013 Oct 27.

PMID:
24161932
12.

Organism-adapted specificity of the allosteric regulation of pyruvate kinase in lactic acid bacteria.

Veith N, Feldman-Salit A, Cojocaru V, Henrich S, Kummer U, Wade RC.

PLoS Comput Biol. 2013;9(7):e1003159. doi: 10.1371/journal.pcbi.1003159. Epub 2013 Jul 25. Erratum in: PLoS Comput Biol. 2014 Jun;10(6):e1003732.

13.

Regulation of the activity of lactate dehydrogenases from four lactic acid bacteria.

Feldman-Salit A, Hering S, Messiha HL, Veith N, Cojocaru V, Sieg A, Westerhoff HV, Kreikemeyer B, Wade RC, Fiedler T.

J Biol Chem. 2013 Jul 19;288(29):21295-306. doi: 10.1074/jbc.M113.458265. Epub 2013 May 17.

14.

TRAPP: a tool for analysis of transient binding pockets in proteins.

Kokh DB, Richter S, Henrich S, Czodrowski P, Rippmann F, Wade RC.

J Chem Inf Model. 2013 May 24;53(5):1235-52. doi: 10.1021/ci4000294. Epub 2013 May 16.

PMID:
23621586
15.

Conformational diversity and ligand tunnels of mammalian cytochrome P450s.

Yu X, Cojocaru V, Wade RC.

Biotechnol Appl Biochem. 2013 Jan-Feb;60(1):134-45. doi: 10.1002/bab.1074. Review.

PMID:
23587001
16.

The shape of protein crowders is a major determinant of protein diffusion.

Balbo J, Mereghetti P, Herten DP, Wade RC.

Biophys J. 2013 Apr 2;104(7):1576-84. doi: 10.1016/j.bpj.2013.02.041.

17.

Translational repression of thymidylate synthase by targeting its mRNA.

Garg D, Beribisky AV, Ponterini G, Ligabue A, Marverti G, Martello A, Costi MP, Sattler M, Wade RC.

Nucleic Acids Res. 2013 Apr;41(7):4159-70. doi: 10.1093/nar/gkt098. Epub 2013 Feb 18.

18.

Ligand-based discovery of N-(1,3-dioxo-1H,3H-benzo[de]isochromen-5-yl)-carboxamide and sulfonamide derivatives as thymidylate synthase A inhibitors.

Ferrari S, Ingrami M, Soragni F, Wade RC, Costi MP.

Bioorg Med Chem Lett. 2013 Feb 1;23(3):663-8. doi: 10.1016/j.bmcl.2012.11.117. Epub 2012 Dec 7.

PMID:
23273520
19.

A tightly regulated molecular toggle controls AAA+ disaggregase.

Oguchi Y, Kummer E, Seyffer F, Berynskyy M, Anstett B, Zahn R, Wade RC, Mogk A, Bukau B.

Nat Struct Mol Biol. 2012 Dec;19(12):1338-46. doi: 10.1038/nsmb.2441. Epub 2012 Nov 18.

PMID:
23160353
20.

Docking of ubiquitin to gold nanoparticles.

Brancolini G, Kokh DB, Calzolai L, Wade RC, Corni S.

ACS Nano. 2012 Nov 27;6(11):9863-78. doi: 10.1021/nn303444b. Epub 2012 Oct 10.

PMID:
23033917
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