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Results: 1 to 20 of 142

1.

LigDig: a web server for querying ligand-protein interactions.

Fuller JC, Martinez M, Henrich S, Stank A, Richter S, Wade RC.

Bioinformatics. 2014 Nov 29. pii: btu784. [Epub ahead of print]

PMID:
25433696
[PubMed - as supplied by publisher]
Free Article
2.

On calculation of the electrostatic potential of a phosphatidylinositol phosphate-containing phosphatidylcholine lipid membrane accounting for membrane dynamics.

Fuller JC, Martinez M, Wade RC.

PLoS One. 2014 Aug 20;9(8):e104778. doi: 10.1371/journal.pone.0104778. eCollection 2014.

PMID:
25141217
[PubMed - in process]
Free PMC Article
3.

Long range Debye-Hückel correction for computation of grid-based electrostatic forces between biomacromolecules.

Mereghetti P, Martinez M, Wade RC.

BMC Biophys. 2014 Jun 17;7:4. doi: 10.1186/2046-1682-7-4. eCollection 2014.

PMID:
25045516
[PubMed]
Free PMC Article
4.

GTP regulates the microtubule nucleation activity of γ-tubulin.

Gombos L, Neuner A, Berynskyy M, Fava LL, Wade RC, Sachse C, Schiebel E.

Nat Cell Biol. 2013 Nov;15(11):1317-27. doi: 10.1038/ncb2863. Epub 2013 Oct 27.

PMID:
24161932
[PubMed - indexed for MEDLINE]
5.

Organism-adapted specificity of the allosteric regulation of pyruvate kinase in lactic acid bacteria.

Veith N, Feldman-Salit A, Cojocaru V, Henrich S, Kummer U, Wade RC.

PLoS Comput Biol. 2013;9(7):e1003159. doi: 10.1371/journal.pcbi.1003159. Epub 2013 Jul 25.

PMID:
23946717
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Regulation of the activity of lactate dehydrogenases from four lactic acid bacteria.

Feldman-Salit A, Hering S, Messiha HL, Veith N, Cojocaru V, Sieg A, Westerhoff HV, Kreikemeyer B, Wade RC, Fiedler T.

J Biol Chem. 2013 Jul 19;288(29):21295-306. doi: 10.1074/jbc.M113.458265. Epub 2013 May 17.

PMID:
23720742
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

TRAPP: a tool for analysis of transient binding pockets in proteins.

Kokh DB, Richter S, Henrich S, Czodrowski P, Rippmann F, Wade RC.

J Chem Inf Model. 2013 May 24;53(5):1235-52. doi: 10.1021/ci4000294. Epub 2013 May 16.

PMID:
23621586
[PubMed - indexed for MEDLINE]
8.

Conformational diversity and ligand tunnels of mammalian cytochrome P450s.

Yu X, Cojocaru V, Wade RC.

Biotechnol Appl Biochem. 2013 Jan-Feb;60(1):134-45. doi: 10.1002/bab.1074. Review.

PMID:
23587001
[PubMed - indexed for MEDLINE]
9.

The shape of protein crowders is a major determinant of protein diffusion.

Balbo J, Mereghetti P, Herten DP, Wade RC.

Biophys J. 2013 Apr 2;104(7):1576-84. doi: 10.1016/j.bpj.2013.02.041.

PMID:
23561534
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Translational repression of thymidylate synthase by targeting its mRNA.

Garg D, Beribisky AV, Ponterini G, Ligabue A, Marverti G, Martello A, Costi MP, Sattler M, Wade RC.

Nucleic Acids Res. 2013 Apr;41(7):4159-70. doi: 10.1093/nar/gkt098. Epub 2013 Feb 18.

PMID:
23423353
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Ligand-based discovery of N-(1,3-dioxo-1H,3H-benzo[de]isochromen-5-yl)-carboxamide and sulfonamide derivatives as thymidylate synthase A inhibitors.

Ferrari S, Ingrami M, Soragni F, Wade RC, Costi MP.

Bioorg Med Chem Lett. 2013 Feb 1;23(3):663-8. doi: 10.1016/j.bmcl.2012.11.117. Epub 2012 Dec 7.

PMID:
23273520
[PubMed - indexed for MEDLINE]
12.

A tightly regulated molecular toggle controls AAA+ disaggregase.

Oguchi Y, Kummer E, Seyffer F, Berynskyy M, Anstett B, Zahn R, Wade RC, Mogk A, Bukau B.

Nat Struct Mol Biol. 2012 Dec;19(12):1338-46. doi: 10.1038/nsmb.2441. Epub 2012 Nov 18.

PMID:
23160353
[PubMed - indexed for MEDLINE]
13.

Docking of ubiquitin to gold nanoparticles.

Brancolini G, Kokh DB, Calzolai L, Wade RC, Corni S.

ACS Nano. 2012 Nov 27;6(11):9863-78. doi: 10.1021/nn303444b. Epub 2012 Oct 10.

PMID:
23033917
[PubMed - indexed for MEDLINE]
14.

A single mutation in a tunnel to the active site changes the mechanism and kinetics of product release in haloalkane dehalogenase LinB.

Biedermannová L, Prokop Z, Gora A, Chovancová E, Kovács M, Damborsky J, Wade RC.

J Biol Chem. 2012 Aug 17;287(34):29062-74. doi: 10.1074/jbc.M112.377853. Epub 2012 Jun 28.

PMID:
22745119
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Atomic detail brownian dynamics simulations of concentrated protein solutions with a mean field treatment of hydrodynamic interactions.

Mereghetti P, Wade RC.

J Phys Chem B. 2012 Jul 26;116(29):8523-33. doi: 10.1021/jp212532h. Epub 2012 May 30.

PMID:
22594708
[PubMed - indexed for MEDLINE]
16.

The interaction properties of the human Rab GTPase family--comparative analysis reveals determinants of molecular binding selectivity.

Stein M, Pilli M, Bernauer S, Habermann BH, Zerial M, Wade RC.

PLoS One. 2012;7(4):e34870. doi: 10.1371/journal.pone.0034870. Epub 2012 Apr 16.

PMID:
22523562
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Allosterically gated enzyme dynamics in the cysteine synthase complex regulate cysteine biosynthesis in Arabidopsis thaliana.

Feldman-Salit A, Wirtz M, Lenherr ED, Throm C, Hothorn M, Scheffzek K, Hell R, Wade RC.

Structure. 2012 Feb 8;20(2):292-302. doi: 10.1016/j.str.2011.11.019.

PMID:
22325778
[PubMed - indexed for MEDLINE]
Free Article
18.

Multiple, ligand-dependent routes from the active site of cytochrome P450 2C9.

Cojocaru V, Winn PJ, Wade RC.

Curr Drug Metab. 2012 Feb;13(2):143-54.

PMID:
22208529
[PubMed - indexed for MEDLINE]
19.

The active-inactive transition of human thymidylate synthase: targeted molecular dynamics simulations.

Salo-Ahen OM, Wade RC.

Proteins. 2011 Oct;79(10):2886-99. doi: 10.1002/prot.23123. Epub 2011 Aug 22.

PMID:
21905113
[PubMed - indexed for MEDLINE]
20.

Structure and dynamics of the membrane-bound cytochrome P450 2C9.

Cojocaru V, Balali-Mood K, Sansom MS, Wade RC.

PLoS Comput Biol. 2011 Aug;7(8):e1002152. doi: 10.1371/journal.pcbi.1002152. Epub 2011 Aug 11.

PMID:
21852944
[PubMed - indexed for MEDLINE]
Free PMC Article

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