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Results: 15

1.

Quantum coupled mutation finder: predicting functionally or structurally important sites in proteins using quantum Jensen-Shannon divergence and CUDA programming.

Gültas M, Düzgün G, Herzog S, Jäger SJ, Meckbach C, Wingender E, Waack S.

BMC Bioinformatics. 2014 Apr 3;15:96. doi: 10.1186/1471-2105-15-96.

PMID:
24694117
[PubMed - in process]
Free PMC Article
2.

GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures.

Hammesfahr B, Odronitz F, Mühlhausen S, Waack S, Kollmar M.

BMC Bioinformatics. 2013 Mar 4;14:77. doi: 10.1186/1471-2105-14-77.

PMID:
23496949
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Coupled mutation finder: a new entropy-based method quantifying phylogenetic noise for the detection of compensatory mutations.

Gültas M, Haubrock M, Tüysüz N, Waack S.

BMC Bioinformatics. 2012 Sep 11;13:225. doi: 10.1186/1471-2105-13-225.

PMID:
22963049
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio.

Hatje K, Keller O, Hammesfahr B, Pillmann H, Waack S, Kollmar M.

BMC Res Notes. 2011 Jul 28;4:265. doi: 10.1186/1756-0500-4-265.

PMID:
21798037
[PubMed]
Free PMC Article
5.

A novel hybrid gene prediction method employing protein multiple sequence alignments.

Keller O, Kollmar M, Stanke M, Waack S.

Bioinformatics. 2011 Mar 15;27(6):757-63. doi: 10.1093/bioinformatics/btr010. Epub 2011 Jan 6.

PMID:
21216780
[PubMed - indexed for MEDLINE]
Free Article
6.

WebScipio: an online tool for the determination of gene structures using protein sequences.

Odronitz F, Pillmann H, Keller O, Waack S, Kollmar M.

BMC Genomics. 2008 Sep 18;9:422. doi: 10.1186/1471-2164-9-422.

PMID:
18801164
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species.

Keller O, Odronitz F, Stanke M, Kollmar M, Waack S.

BMC Bioinformatics. 2008 Jun 13;9:278. doi: 10.1186/1471-2105-9-278.

PMID:
18554390
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

AUGUSTUS: ab initio prediction of alternative transcripts.

Stanke M, Keller O, Gunduz I, Hayes A, Waack S, Morgenstern B.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W435-9.

PMID:
16845043
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

P-value based visualization of codon usage data.

Meinicke P, Brodag T, Fricke WF, Waack S.

Algorithms Mol Biol. 2006 Jun 29;1(1):10.

PMID:
16808834
[PubMed]
Free PMC Article
10.

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models.

Waack S, Keller O, Asper R, Brodag T, Damm C, Fricke WF, Surovcik K, Meinicke P, Merkl R.

BMC Bioinformatics. 2006 Mar 16;7:142.

PMID:
16542435
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources.

Stanke M, Schöffmann O, Morgenstern B, Waack S.

BMC Bioinformatics. 2006 Feb 9;7:62.

PMID:
16469098
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

AUGUSTUS: a web server for gene finding in eukaryotes.

Stanke M, Steinkamp R, Waack S, Morgenstern B.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W309-12.

PMID:
15215400
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Gene prediction with a hidden Markov model and a new intron submodel.

Stanke M, Waack S.

Bioinformatics. 2003 Oct;19 Suppl 2:ii215-25.

PMID:
14534192
[PubMed - indexed for MEDLINE]
Free Article
14.

Lowering extracellular Na+ concentration releases autocrine growth factors from renal epithelial cells.

Walsh-Reitz MM, Gluck SL, Waack S, Toback FG.

Proc Natl Acad Sci U S A. 1986 Jul;83(13):4764-8.

PMID:
3460070
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Extracellular potassium modifies the structure of kidney epithelial cells in culture.

Waack S, Walsh-Reitz MM, Toback FG.

Am J Physiol. 1985 Jul;249(1 Pt 1):C105-10.

PMID:
2861744
[PubMed - indexed for MEDLINE]

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