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Results: 1 to 20 of 21

1.

Ensembl 2015.

Cunningham F, Amode MR, Barrell D, Beal K, Billis K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fitzgerald S, Gil L, Girón CG, Gordon L, Hourlier T, Hunt SE, Janacek SH, Johnson N, Juettemann T, Kähäri AK, Keenan S, Martin FJ, Maurel T, McLaren W, Murphy DN, Nag R, Overduin B, Parker A, Patricio M, Perry E, Pignatelli M, Riat HS, Sheppard D, Taylor K, Thormann A, Vullo A, Wilder SP, Zadissa A, Aken BL, Birney E, Harrow J, Kinsella R, Muffato M, Ruffier M, Searle SM, Spudich G, Trevanion SJ, Yates A, Zerbino DR, Flicek P.

Nucleic Acids Res. 2015 Jan 28;43(Database issue):D662-9. doi: 10.1093/nar/gku1010. Epub 2014 Oct 28.

PMID:
25352552
[PubMed - in process]
Free Article
2.

The Ensembl REST API: Ensembl Data for Any Language.

Yates A, Beal K, Keenan S, McLaren W, Pignatelli M, Ritchie GR, Ruffier M, Taylor K, Vullo A, Flicek P.

Bioinformatics. 2015 Jan 1;31(1):143-5. doi: 10.1093/bioinformatics/btu613. Epub 2014 Sep 17.

PMID:
25236461
[PubMed - in process]
Free PMC Article
3.

Can Bayesian models play a role in dental caries epidemiology? Evidence from an application to the BELCAP data set.

Matranga D, Firenze A, Vullo A.

Community Dent Oral Epidemiol. 2013 Oct;41(5):473-80. doi: 10.1111/cdoe.12044. Epub 2013 Mar 12.

PMID:
25098917
[PubMed - in process]
4.

Ensembl 2014.

Flicek P, Amode MR, Barrell D, Beal K, Billis K, Brent S, Carvalho-Silva D, Clapham P, Coates G, Fitzgerald S, Gil L, Girón CG, Gordon L, Hourlier T, Hunt S, Johnson N, Juettemann T, Kähäri AK, Keenan S, Kulesha E, Martin FJ, Maurel T, McLaren WM, Murphy DN, Nag R, Overduin B, Pignatelli M, Pritchard B, Pritchard E, Riat HS, Ruffier M, Sheppard D, Taylor K, Thormann A, Trevanion SJ, Vullo A, Wilder SP, Wilson M, Zadissa A, Aken BL, Birney E, Cunningham F, Harrow J, Herrero J, Hubbard TJ, Kinsella R, Muffato M, Parker A, Spudich G, Yates A, Zerbino DR, Searle SM.

Nucleic Acids Res. 2014 Jan;42(Database issue):D749-55. doi: 10.1093/nar/gkt1196. Epub 2013 Dec 6.

PMID:
24316576
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs.

Walsh I, Martin AJ, Di Domenico T, Vullo A, Pollastri G, Tosatto SC.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W190-6. doi: 10.1093/nar/gkr411. Epub 2011 Jun 6.

PMID:
21646342
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Ab initio and homology based prediction of protein domains by recursive neural networks.

Walsh I, Martin AJ, Mooney C, Rubagotti E, Vullo A, Pollastri G.

BMC Bioinformatics. 2009 Jun 26;10:195. doi: 10.1186/1471-2105-10-195.

PMID:
19558651
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.

Walsh I, Baù D, Martin AJ, Mooney C, Vullo A, Pollastri G.

BMC Struct Biol. 2009 Jan 30;9:5. doi: 10.1186/1472-6807-9-5.

PMID:
19183478
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Long-range information and physicality constraints improve predicted protein contact maps.

Martin AJ, Baù D, Vullo A, Walsh I, Pollastri G.

J Bioinform Comput Biol. 2008 Oct;6(5):1001-20.

PMID:
18942163
[PubMed - indexed for MEDLINE]
9.

Spatial distribution of brucellosis in sheep and goats in Sicily from 2001 to 2005.

D'Orazi A, Mignemi M, Geraci F, Vullo A, Di Gesaro M, Vullo S, Bagnato M, Di Bella C.

Vet Ital. 2007 Jul-Sep;43(3):541-8.

PMID:
20422533
[PubMed]
Free Article
10.

Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information.

Pollastri G, Martin AJ, Mooney C, Vullo A.

BMC Bioinformatics. 2007 Jun 14;8:201.

PMID:
17570843
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Protein structural motif prediction in multidimensional phi-psi space leads to improved secondary structure prediction.

Mooney C, Vullo A, Pollastri G.

J Comput Biol. 2006 Oct;13(8):1489-502.

PMID:
17061924
[PubMed - indexed for MEDLINE]
12.

Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins.

Baú D, Martin AJ, Mooney C, Vullo A, Walsh I, Pollastri G.

BMC Bioinformatics. 2006 Sep 5;7:402.

PMID:
16953874
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

DISULFIND: a disulfide bonding state and cysteine connectivity prediction server.

Ceroni A, Passerini A, Vullo A, Frasconi P.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W177-81.

PMID:
16844986
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines.

Vullo A, Bortolami O, Pollastri G, Tosatto SC.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W164-8.

PMID:
16844983
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Modular DAG-RNN architectures for assembling coarse protein structures.

Pollastri G, Vullo A, Frasconi P, Baldi P.

J Comput Biol. 2006 Apr;13(3):631-50.

PMID:
16706716
[PubMed - indexed for MEDLINE]
16.

A two-stage approach for improved prediction of residue contact maps.

Vullo A, Walsh I, Pollastri G.

BMC Bioinformatics. 2006 Mar 30;7:180.

PMID:
16573808
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A bi-recursive neural network architecture for the prediction of protein coarse contact maps.

Vullo A, Frasconi P.

Proc IEEE Comput Soc Bioinform Conf. 2002;1:187-96.

PMID:
15838135
[PubMed - indexed for MEDLINE]
18.

Prediction of protein coarse contact maps.

Vullo A, Frasconi P.

J Bioinform Comput Biol. 2003 Jul;1(2):411-31.

PMID:
15290778
[PubMed - indexed for MEDLINE]
19.

Disulfide connectivity prediction using recursive neural networks and evolutionary information.

Vullo A, Frasconi P.

Bioinformatics. 2004 Mar 22;20(5):653-9. Epub 2004 Jan 22.

PMID:
15033872
[PubMed - indexed for MEDLINE]
Free Article
20.

[Structure of the neural plexus of the gallbladder of dogs].

Avila RE, de Fabro SR, Gallardo CS, Vullo A, Samar ME.

Rev Fac Cien Med Univ Nac Cordoba. 1986;44(1):28-30. Spanish. No abstract available.

PMID:
3326077
[PubMed - indexed for MEDLINE]
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