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Results: 1 to 20 of 115

1.

Enriched biodiversity data as a resource and service.

Vos RA, Biserkov JV, Balech B, Beard N, Blissett M, Brenninkmeijer C, van Dooren T, Eades D, Gosline G, Groom QJ, Hamann TD, Hettling H, Hoehndorf R, Holleman A, Hovenkamp P, Kelbert P, King D, Kirkup D, Lammers Y, DeMeulemeester T, Mietchen D, Miller JA, Mounce R, Nicolson N, Page R, Pawlik A, Pereira S, Penev L, Richards K, Sautter G, Shorthouse DP, Tähtinen M, Weiland C, Williams AR, Sierra S.

Biodivers Data J. 2014 Jun 16;(2):e1125. doi: 10.3897/BDJ.2.e1125. eCollection 2014.

PMID:
25057255
[PubMed]
Free PMC Article
2.

Advancing data reuse in phyloinformatics using an ontology-driven Semantic Web approach.

Panahiazar M, Sheth AP, Ranabahu A, Vos RA, Leebens-Mack J.

BMC Med Genomics. 2013;6 Suppl 3:S5. doi: 10.1186/1755-8794-6-S3-S5. Epub 2013 Nov 11.

PMID:
24565381
[PubMed - in process]
Free PMC Article
3.

The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data.

Lammers Y, Peelen T, Vos RA, Gravendeel B.

BMC Bioinformatics. 2014 Feb 6;15:44. doi: 10.1186/1471-2105-15-44.

PMID:
24502833
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system.

Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wüster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pla D, Sanz L, Hyder AS, Ribeiro JM, Arntzen JW, van den Thillart GE, Boetzer M, Pirovano W, Dirks RP, Spaink HP, Duboule D, McGlinn E, Kini RM, Richardson MK.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20651-6. doi: 10.1073/pnas.1314702110. Epub 2013 Dec 2.

PMID:
24297900
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.

Katayama T, Wilkinson MD, Micklem G, Kawashima S, Yamaguchi A, Nakao M, Yamamoto Y, Okamoto S, Oouchida K, Chun HW, Aerts J, Afzal H, Antezana E, Arakawa K, Aranda B, Belleau F, Bolleman J, Bonnal RJ, Chapman B, Cock PJ, Eriksson T, Gordon PM, Goto N, Hayashi K, Horn H, Ishiwata R, Kaminuma E, Kasprzyk A, Kawaji H, Kido N, Kim YJ, Kinjo AR, Konishi F, Kwon KH, Labarga A, Lamprecht AL, Lin Y, Lindenbaum P, McCarthy L, Morita H, Murakami K, Nagao K, Nishida K, Nishimura K, Nishizawa T, Ogishima S, Ono K, Oshita K, Park KJ, Prins P, Saito TL, Samwald M, Satagopam VP, Shigemoto Y, Smith R, Splendiani A, Sugawara H, Taylor J, Vos RA, Withers D, Yamasaki C, Zmasek CM, Kawamoto S, Okubo K, Asai K, Takagi T.

J Biomed Semantics. 2013 Feb 11;4(1):6. doi: 10.1186/2041-1480-4-6.

PMID:
23398680
[PubMed]
Free PMC Article
6.

Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis.

Stoltzfus A, O'Meara B, Whitacre J, Mounce R, Gillespie EL, Kumar S, Rosauer DF, Vos RA.

BMC Res Notes. 2012 Oct 22;5:574. doi: 10.1186/1756-0500-5-574.

PMID:
23088596
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

NeXML: rich, extensible, and verifiable representation of comparative data and metadata.

Vos RA, Balhoff JP, Caravas JA, Holder MT, Lapp H, Maddison WP, Midford PE, Priyam A, Sukumaran J, Xia X, Stoltzfus A.

Syst Biol. 2012 Jul;61(4):675-89. doi: 10.1093/sysbio/sys025. Epub 2012 Feb 22.

PMID:
22357728
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Pathoanatomy of cerebellar degeneration in spinocerebellar ataxia type 2 (SCA2) and type 3 (SCA3).

Scherzed W, Brunt ER, Heinsen H, de Vos RA, Seidel K, Bürk K, Schöls L, Auburger G, Del Turco D, Deller T, Korf HW, den Dunnen WF, Rüb U.

Cerebellum. 2012 Sep;11(3):749-60. doi: 10.1007/s12311-011-0340-8.

PMID:
22198871
[PubMed - indexed for MEDLINE]
9.

BIO::Phylo-phyloinformatic analysis using perl.

Vos RA, Caravas J, Hartmann K, Jensen MA, Miller C.

BMC Bioinformatics. 2011 Feb 27;12:63. doi: 10.1186/1471-2105-12-63.

PMID:
21352572
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.

Katayama T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita KF, Yamamoto Y, Yamaguchi A, Kawashima S, Chun HW, Aerts J, Aranda B, Barboza LH, Bonnal RJ, Bruskiewich R, Bryne JC, Fernández JM, Funahashi A, Gordon PM, Goto N, Groscurth A, Gutteridge A, Holland R, Kano Y, Kawas EA, Kerhornou A, Kibukawa E, Kinjo AR, Kuhn M, Lapp H, Lehvaslaiho H, Nakamura H, Nakamura Y, Nishizawa T, Nobata C, Noguchi T, Oinn TM, Okamoto S, Owen S, Pafilis E, Pocock M, Prins P, Ranzinger R, Reisinger F, Salwinski L, Schreiber M, Senger M, Shigemoto Y, Standley DM, Sugawara H, Tashiro T, Trelles O, Vos RA, Wilkinson MD, York W, Zmasek CM, Asai K, Takagi T.

J Biomed Semantics. 2010 Aug 21;1(1):8. doi: 10.1186/2041-1480-1-8.

PMID:
20727200
[PubMed]
Free PMC Article
11.

Axonal inclusions in spinocerebellar ataxia type 3.

Seidel K, den Dunnen WF, Schultz C, Paulson H, Frank S, de Vos RA, Brunt ER, Deller T, Kampinga HH, Rüb U.

Acta Neuropathol. 2010 Oct;120(4):449-60. doi: 10.1007/s00401-010-0717-7. Epub 2010 Jul 16.

PMID:
20635090
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Evolution of embryonic developmental period in the marine bird families Alcidae and Spheniscidae: roles for nutrition and predation?

Hipfner JM, Gorman KB, Vos RA, Joy JB.

BMC Evol Biol. 2010 Jun 14;10:179. doi: 10.1186/1471-2148-10-179.

PMID:
20546608
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Inverse relationship between cerebrovascular lesions and severity of lewy body pathology in patients with lewy body diseases.

Ghebremedhin E, Rosenberger A, Rüb U, Vuksic M, Berhe T, Bickeböller H, de Vos RA, Thal DR, Deller T.

J Neuropathol Exp Neurol. 2010 May;69(5):442-8. doi: 10.1097/NEN.0b013e3181d88e63.

PMID:
20418782
[PubMed - indexed for MEDLINE]
14.

The p62 antibody reveals various cytoplasmic protein aggregates in spinocerebellar ataxia type 6.

Seidel K, Brunt ER, de Vos RA, Dijk F, van der Want HJ, Rüb U, den Dunnen WF.

Clin Neuropathol. 2009 Sep-Oct;28(5):344-9.

PMID:
19788049
[PubMed - indexed for MEDLINE]
Free Article
15.

CD8(+)/perforin/granzyme B(+) effector cells infiltrating cerebellum and inferior olives in gluten ataxia.

Mittelbronn M, Schittenhelm J, Bakos G, de Vos RA, Wehrmann M, Meyermann R, Bürk K.

Neuropathology. 2010 Feb 1;30(1):92-6. doi: 10.1111/j.1440-1789.2009.01042.x. Epub 2009 Jul 19.

PMID:
19622110
[PubMed - indexed for MEDLINE]
16.

Spinocerebellar ataxia type 6 (SCA6): neurodegeneration goes beyond the known brain predilection sites.

Gierga K, Schelhaas HJ, Brunt ER, Seidel K, Scherzed W, Egensperger R, de Vos RA, den Dunnen W, Ippel PF, Petrasch-Parwez E, Deller T, Schöls L, Rüb U.

Neuropathol Appl Neurobiol. 2009 Oct;35(5):515-27. doi: 10.1111/j.1365-2990.2009.01015.x. Epub 2009 Jan 30.

PMID:
19207264
[PubMed - indexed for MEDLINE]
17.

Cerebral amyloid angiopathy and its relationship to Alzheimer's disease.

Thal DR, Griffin WS, de Vos RA, Ghebremedhin E.

Acta Neuropathol. 2008 Jun;115(6):599-609. doi: 10.1007/s00401-008-0366-2. Epub 2008 Mar 28. Review.

PMID:
18369648
[PubMed - indexed for MEDLINE]
18.

Proteasome subunit proteins and neuropathology in tauopathies and synucleinopathies: Consequences for proteomic analyses.

Zouambia M, Fischer DF, Hobo B, De Vos RA, Hol EM, Varndell IM, Sheppard PW, Van Leeuwen FW.

Proteomics. 2008 Mar;8(6):1221-36. doi: 10.1002/pmic.200700679.

PMID:
18283660
[PubMed - indexed for MEDLINE]
19.

Involvement of the auditory brainstem system in spinocerebellar ataxia type 2 (SCA2), type 3 (SCA3) and type 7 (SCA7).

Hoche F, Seidel K, Brunt ER, Auburger G, Schöls L, Bürk K, de Vos RA, den Dunnen W, Bechmann I, Egensperger R, Van Broeckhoven C, Gierga K, Deller T, Rüb U.

Neuropathol Appl Neurobiol. 2008 Oct;34(5):479-91. doi: 10.1111/j.1365-2990.2007.00933.x. Epub 2008 Jan 24.

PMID:
18221259
[PubMed - indexed for MEDLINE]
20.

Spinocerebellar ataxia type 7 (SCA7): widespread brain damage in an adult-onset patient with progressive visual impairments in comparison with an adult-onset patient without visual impairments.

Rüb U, Brunt ER, Seidel K, Gierga K, Mooy CM, Kettner M, Van Broeckhoven C, Bechmann I, La Spada AR, Schöls L, den Dunnen W, de Vos RA, Deller T.

Neuropathol Appl Neurobiol. 2008 Apr;34(2):155-68. Epub 2007 Oct 26.

PMID:
17971076
[PubMed - indexed for MEDLINE]

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