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Results: 1 to 20 of 63

1.

Direct Detection of Transcription Factors in Cotyledons during Seedling Development Using Sensitive Silicon-Substrate Photonic Crystal Protein Arrays.

Jones SI, Tan Y, Shamimuzzaman M, George S, Cunningham BT, Vodkin L.

Plant Physiol. 2015 Mar;167(3):639-49. doi: 10.1104/pp.114.253666. Epub 2015 Jan 29.

PMID:
25635113
[PubMed - in process]
Free Article
2.

Methylation affects transposition and splicing of a large CACTA transposon from a MYB transcription factor regulating anthocyanin synthase genes in soybean seed coats.

Zabala G, Vodkin LO.

PLoS One. 2014 Nov 4;9(11):e111959. doi: 10.1371/journal.pone.0111959. eCollection 2014.

PMID:
25369033
[PubMed - in process]
Free PMC Article
3.

Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling.

Shamimuzzaman M, Vodkin L.

Funct Integr Genomics. 2014 Dec;14(4):683-96. doi: 10.1007/s10142-014-0388-x. Epub 2014 Jul 29.

PMID:
25070765
[PubMed - in process]
4.

RNA-Seq profiling of a defective seed coat mutation in Glycine max reveals differential expression of proline-rich and other cell wall protein transcripts.

Kour A, Boone AM, Vodkin LO.

PLoS One. 2014 May 14;9(5):e96342. doi: 10.1371/journal.pone.0096342. eCollection 2014.

PMID:
24828743
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The transition from primary siRNAs to amplified secondary siRNAs that regulate chalcone synthase during development of Glycine max seed coats.

Cho YB, Jones SI, Vodkin L.

PLoS One. 2013 Oct 21;8(10):e76954. doi: 10.1371/journal.pone.0076954. eCollection 2013.

PMID:
24204712
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq.

Shamimuzzaman M, Vodkin L.

BMC Genomics. 2013 Jul 16;14:477. doi: 10.1186/1471-2164-14-477.

PMID:
23865409
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Using RNA-Seq to profile soybean seed development from fertilization to maturity.

Jones SI, Vodkin LO.

PLoS One. 2013;8(3):e59270. doi: 10.1371/journal.pone.0059270. Epub 2013 Mar 15.

PMID:
23555009
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max.

Zabala G, Campos E, Varala KK, Bloomfield S, Jones SI, Win H, Tuteja JH, Calla B, Clough SJ, Hudson M, Vodkin LO.

BMC Plant Biol. 2012 Oct 2;12:177. doi: 10.1186/1471-2229-12-177.

PMID:
23031057
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing.

Shamimuzzaman M, Vodkin L.

BMC Genomics. 2012 Jul 16;13:310. doi: 10.1186/1471-2164-13-310.

PMID:
22799740
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The interaction of the novel 30C02 cyst nematode effector protein with a plant β-1,3-endoglucanase may suppress host defence to promote parasitism.

Hamamouch N, Li C, Hewezi T, Baum TJ, Mitchum MG, Hussey RS, Vodkin LO, Davis EL.

J Exp Bot. 2012 Jun;63(10):3683-95. doi: 10.1093/jxb/ers058. Epub 2012 Mar 21.

PMID:
22442414
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Using photonic crystal enhanced fluorescence on quartz substrates to improve the sensitivity of DNA microarrays.

George S, Pokhriyal A, Jones SI, Lu M, Vodkin LO, Cunningham BT.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:26-9. doi: 10.1109/IEMBS.2011.6089888.

PMID:
22254242
[PubMed - indexed for MEDLINE]
12.

Transcript profiling reveals expression differences in wild-type and glabrous soybean lines.

Hunt M, Kaur N, Stromvik M, Vodkin L.

BMC Plant Biol. 2011 Oct 26;11:145. doi: 10.1186/1471-2229-11-145.

PMID:
22029708
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Label-free prehybridization DNA microarray imaging using photonic crystals for quantitative spot quality analysis.

George S, Block ID, Jones SI, Mathias PC, Chaudhery V, Vuttipittayamongkol P, Wu HY, Vodkin LO, Cunningham BT.

Anal Chem. 2010 Oct 15;82(20):8551-7. doi: 10.1021/ac101551c.

PMID:
20857905
[PubMed - indexed for MEDLINE]
14.

Improved sensitivity of DNA microarrays using photonic crystal enhanced fluorescence.

Mathias PC, Jones SI, Wu HY, Yang F, Ganesh N, Gonzalez DO, Bollero G, Vodkin LO, Cunningham BT.

Anal Chem. 2010 Aug 15;82(16):6854-61. doi: 10.1021/ac100841d.

PMID:
20704375
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Flux of transcript patterns during soybean seed development.

Jones SI, Gonzalez DO, Vodkin LO.

BMC Genomics. 2010 Feb 24;11:136. doi: 10.1186/1471-2164-11-136.

PMID:
20181280
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Optimizing the spatial resolution of photonic crystal label-free imaging.

Block ID, Mathias PC, Jones SI, Vodkin LO, Cunningham BT.

Appl Opt. 2009 Dec 1;48(34):6567-74. doi: 10.1364/AO.48.006567.

PMID:
19956311
[PubMed - indexed for MEDLINE]
17.

Endogenous, tissue-specific short interfering RNAs silence the chalcone synthase gene family in glycine max seed coats.

Tuteja JH, Zabala G, Varala K, Hudson M, Vodkin LO.

Plant Cell. 2009 Oct;21(10):3063-77. doi: 10.1105/tpc.109.069856. Epub 2009 Oct 9. Erratum in: Plant Cell. 2010 May;22(5):1647.

PMID:
19820189
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A detection instrument for enhanced-fluorescence and label-free imaging on photonic crystal surfaces.

Block ID, Mathias PC, Ganesh N, Jones SI, Dorvel BR, Chaudhery V, Vodkin LO, Bashir R, Cunningham BT.

Opt Express. 2009 Jul 20;17(15):13222-35.

PMID:
19654728
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A putative autonomous 20.5 kb-CACTA transposon insertion in an F3'H allele identifies a new CACTA transposon subfamily in Glycine max.

Zabala G, Vodkin L.

BMC Plant Biol. 2008 Dec 2;8:124. doi: 10.1186/1471-2229-8-124.

PMID:
19055742
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Transcriptome response to glyphosate in sensitive and resistant soybean.

Zhu J, Patzoldt WL, Shealy RT, Vodkin LO, Clough SJ, Tranel PJ.

J Agric Food Chem. 2008 Aug 13;56(15):6355-63. doi: 10.1021/jf801254e. Epub 2008 Jul 18.

PMID:
18636734
[PubMed - indexed for MEDLINE]
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