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Results: 1 to 20 of 208

1.

ChIP-exo signal associated with DNA-binding motifs provide insights into the genomic binding of the glucocorticoid receptor and cooperating transcription factors.

Starick SR, Ibn-Salem J, Jurk M, Hernandez C, Love MI, Chung HR, Vingron M, Thomas-Chollier M, Meijsing SH.

Genome Res. 2015 Feb 26. pii: gr.185157.114. [Epub ahead of print]

2.

Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data.

Fernandez-Cuesta L, Sun R, Menon R, George J, Lorenz S, Meza-Zepeda LA, Peifer M, Plenker D, Heuckmann JM, Leenders F, Zander T, Dahmen I, Koker M, Schöttle J, Ullrich RT, Altmüller J, Becker C, Nürnberg P, Seidel H, Böhm D, Göke F, Ansén S, Russell PA, Wright GM, Wainer Z, Solomon B, Petersen I, Clement JH, Sänger J, Brustugun OT, Helland Å, Solberg S, Lund-Iversen M, Buettner R, Wolf J, Brambilla E, Vingron M, Perner S, Haas SA, Thomas RK.

Genome Biol. 2015 Jan 5;16:7. doi: 10.1186/s13059-014-0558-0.

3.

X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes.

Hu H, Haas SA, Chelly J, Van Esch H, Raynaud M, de Brouwer AP, Weinert S, Froyen G, Frints SG, Laumonnier F, Zemojtel T, Love MI, Richard H, Emde AK, Bienek M, Jensen C, Hambrock M, Fischer U, Langnick C, Feldkamp M, Wissink-Lindhout W, Lebrun N, Castelnau L, Rucci J, Montjean R, Dorseuil O, Billuart P, Stuhlmann T, Shaw M, Corbett MA, Gardner A, Willis-Owen S, Tan C, Friend KL, Belet S, van Roozendaal KE, Jimenez-Pocquet M, Moizard MP, Ronce N, Sun R, O'Keeffe S, Chenna R, van Bömmel A, Göke J, Hackett A, Field M, Christie L, Boyle J, Haan E, Nelson J, Turner G, Baynam G, Gillessen-Kaesbach G, Müller U, Steinberger D, Budny B, Badura-Stronka M, Latos-Bieleńska A, Ousager LB, Wieacker P, Rodríguez Criado G, Bondeson ML, Annerén G, Dufke A, Cohen M, Van Maldergem L, Vincent-Delorme C, Echenne B, Simon-Bouy B, Kleefstra T, Willemsen M, Fryns JP, Devriendt K, Ullmann R, Vingron M, Wrogemann K, Wienker TF, Tzschach A, van Bokhoven H, Gecz J, Jentsch TJ, Chen W, Ropers HH, Kalscheuer VM.

Mol Psychiatry. 2015 Feb 3. doi: 10.1038/mp.2014.193. [Epub ahead of print]

4.

Inference of interactions between chromatin modifiers and histone modifications: from ChIP-Seq data to chromatin-signaling.

Perner J, Lasserre J, Kinkley S, Vingron M, Chung HR.

Nucleic Acids Res. 2014 Dec 16;42(22):13689-95. doi: 10.1093/nar/gku1234. Epub 2014 Nov 20.

5.

Somatic neurofibromatosis type 1 (NF1) inactivation events in cutaneous neurofibromas of a single NF1 patient.

Emmerich D, Zemojtel T, Hecht J, Krawitz P, Spielmann M, Kühnisch J, Kobus K, Osswald M, Heinrich V, Berlien P, Müller U, Mautner VF, Wimmer K, Robinson PN, Vingron M, Tinschert S, Mundlos S, Kolanczyk M.

Eur J Hum Genet. 2014 Oct 8. doi: 10.1038/ejhg.2014.210. [Epub ahead of print]

PMID:
25293717
6.

Reconstruction of gene regulatory network related to photosynthesis in Arabidopsis thaliana.

Yu X, Zheng G, Shan L, Meng G, Vingron M, Liu Q, Zhu XG.

Front Plant Sci. 2014 Jun 13;5:273. doi: 10.3389/fpls.2014.00273. eCollection 2014.

7.

Inferring the paths of somatic evolution in cancer.

Misra N, Szczurek E, Vingron M.

Bioinformatics. 2014 Sep 1;30(17):2456-63. doi: 10.1093/bioinformatics/btu319. Epub 2014 May 7.

PMID:
24812340
8.

Natural variation of histone modification and its impact on gene expression in the rat genome.

Rintisch C, Heinig M, Bauerfeind A, Schafer S, Mieth C, Patone G, Hummel O, Chen W, Cook S, Cuppen E, Colomé-Tatché M, Johannes F, Jansen RC, Neil H, Werner M, Pravenec M, Vingron M, Hubner N.

Genome Res. 2014 Jun;24(6):942-53. doi: 10.1101/gr.169029.113. Epub 2014 May 2.

9.

Frequent mutations in chromatin-remodelling genes in pulmonary carcinoids.

Fernandez-Cuesta L, Peifer M, Lu X, Sun R, Ozretić L, Seidel D, Zander T, Leenders F, George J, Müller C, Dahmen I, Pinther B, Bosco G, Konrad K, Altmüller J, Nürnberg P, Achter V, Lang U, Schneider PM, Bogus M, Soltermann A, Brustugun OT, Helland Å, Solberg S, Lund-Iversen M, Ansén S, Stoelben E, Wright GM, Russell P, Wainer Z, Solomon B, Field JK, Hyde R, Davies MP, Heukamp LC, Petersen I, Perner S, Lovly CM, Cappuzzo F, Travis WD, Wolf J, Vingron M, Brambilla E, Haas SA, Buettner R, Thomas RK.

Nat Commun. 2014 Mar 27;5:3518. doi: 10.1038/ncomms4518.

10.

Condition-specific target prediction from motifs and expression.

Meng G, Vingron M.

Bioinformatics. 2014 Jun 15;30(12):1643-50. doi: 10.1093/bioinformatics/btu066. Epub 2014 Feb 14.

PMID:
24532727
11.

CD74-NRG1 fusions in lung adenocarcinoma.

Fernandez-Cuesta L, Plenker D, Osada H, Sun R, Menon R, Leenders F, Ortiz-Cuaran S, Peifer M, Bos M, Daßler J, Malchers F, Schöttle J, Vogel W, Dahmen I, Koker M, Ullrich RT, Wright GM, Russell PA, Wainer Z, Solomon B, Brambilla E, Nagy-Mignotte H, Moro-Sibilot D, Brambilla CG, Lantuejoul S, Altmüller J, Becker C, Nürnberg P, Heuckmann JM, Stoelben E, Petersen I, Clement JH, Sänger J, Muscarella LA, la Torre A, Fazio VM, Lahortiga I, Perera T, Ogata S, Parade M, Brehmer D, Vingron M, Heukamp LC, Buettner R, Zander T, Wolf J, Perner S, Ansén S, Haas SA, Yatabe Y, Thomas RK.

Cancer Discov. 2014 Apr;4(4):415-22. doi: 10.1158/2159-8290.CD-13-0633. Epub 2014 Jan 27.

PMID:
24469108
12.

A naturally occurring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms.

Thomas-Chollier M, Watson LC, Cooper SB, Pufall MA, Liu JS, Borzym K, Vingron M, Yamamoto KR, Meijsing SH.

Proc Natl Acad Sci U S A. 2013 Oct 29;110(44):17826-31. doi: 10.1073/pnas.1316235110. Epub 2013 Oct 14.

13.

Finding associations among histone modifications using sparse partial correlation networks.

Lasserre J, Chung HR, Vingron M.

PLoS Comput Biol. 2013;9(9):e1003168. doi: 10.1371/journal.pcbi.1003168. Epub 2013 Sep 5.

14.

Inferring nucleosome positions with their histone mark annotation from ChIP data.

Mammana A, Vingron M, Chung HR.

Bioinformatics. 2013 Oct 15;29(20):2547-54. doi: 10.1093/bioinformatics/btt449. Epub 2013 Aug 26.

15.

PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs.

Marsico A, Huska MR, Lasserre J, Hu H, Vucicevic D, Musahl A, Orom U, Vingron M.

Genome Biol. 2013 Aug 16;14(8):R84. doi: 10.1186/gb-2013-14-8-r84.

16.

Genome-wide kinase-chromatin interactions reveal the regulatory network of ERK signaling in human embryonic stem cells.

Göke J, Chan YS, Yan J, Vingron M, Ng HH.

Mol Cell. 2013 Jun 27;50(6):844-55. doi: 10.1016/j.molcel.2013.04.030. Epub 2013 May 30.

17.

Synthetic sickness or lethality points at candidate combination therapy targets in glioblastoma.

Szczurek E, Misra N, Vingron M.

Int J Cancer. 2013 Nov;133(9):2123-32. doi: 10.1002/ijc.28235. Epub 2013 Jun 4.

PMID:
23629686
18.

Genome-wide analysis of LXRα activation reveals new transcriptional networks in human atherosclerotic foam cells.

Feldmann R, Fischer C, Kodelja V, Behrens S, Haas S, Vingron M, Timmermann B, Geikowski A, Sauer S.

Nucleic Acids Res. 2013 Apr 1;41(6):3518-31. doi: 10.1093/nar/gkt034. Epub 2013 Feb 7.

19.

T cells become licensed in the lung to enter the central nervous system.

Odoardi F, Sie C, Streyl K, Ulaganathan VK, Schläger C, Lodygin D, Heckelsmiller K, Nietfeld W, Ellwart J, Klinkert WE, Lottaz C, Nosov M, Brinkmann V, Spang R, Lehrach H, Vingron M, Wekerle H, Flügel-Koch C, Flügel A.

Nature. 2012 Aug 30;488(7413):675-9. doi: 10.1038/nature11337.

PMID:
22914092
20.

R2KS: a novel measure for comparing gene expression based on ranked gene lists.

Ni S, Vingron M.

J Comput Biol. 2012 Jun;19(6):766-75. doi: 10.1089/cmb.2012.0026.

PMID:
22697246
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