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Results: 16

1.

Joint modeling of ChIP-seq data via a Markov random field model.

Bao Y, Vinciotti V, Wit E, 't Hoen PA.

Biostatistics. 2014 Apr;15(2):296-310. doi: 10.1093/biostatistics/kxt047. Epub 2013 Oct 30.

PMID:
24178187
[PubMed - in process]
2.

Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data.

Bao Y, Vinciotti V, Wit E, 't Hoen PA.

BMC Bioinformatics. 2013 May 30;14:169. doi: 10.1186/1471-2105-14-169.

PMID:
23721376
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Interspecies translation of disease networks increases robustness and predictive accuracy.

Anvar SY, Tucker A, Vinciotti V, Venema A, van Ommen GJ, van der Maarel SM, Raz V, 't Hoen PA.

PLoS Comput Biol. 2011 Nov;7(11):e1002258. doi: 10.1371/journal.pcbi.1002258. Epub 2011 Nov 3. Erratum in: PLoS Comput Biol. 2011 Nov;7(11). doi: 10.1371/annotation/fc0b4192-6427-4fb3-b347-c66651adf855.

PMID:
22072955
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The consequences of feminization in breeding groups of wild fish.

Harris CA, Hamilton PB, Runnalls TJ, Vinciotti V, Henshaw A, Hodgson D, Coe TS, Jobling S, Tyler CR, Sumpter JP.

Environ Health Perspect. 2011 Mar;119(3):306-11. doi: 10.1289/ehp.1002555.

PMID:
21362587
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

M-quantile regression analysis of temporal gene expression data.

Vinciotti V, Yu K.

Stat Appl Genet Mol Biol. 2009;8:Article 41. doi: 10.2202/1544-6115.1452. Epub 2009 Sep 22.

PMID:
19799560
[PubMed - indexed for MEDLINE]
6.

An extended Kalman filtering approach to modeling nonlinear dynamic gene regulatory networks via short gene expression time series.

Wang Z, Liu X, Liu Y, Liang J, Vinciotti V.

IEEE/ACM Trans Comput Biol Bioinform. 2009 Jul-Sep;6(3):410-9. doi: 10.1109/TCBB.2009.5.

PMID:
19644169
[PubMed - indexed for MEDLINE]
7.

Computational inference of replication and transcription activator regulator activity in herpesvirus from gene expression data.

Recchia A, Wit E, Vinciotti V, Kellam P.

IET Syst Biol. 2008 Nov;2(6):385-96. doi: 10.1049/iet-syb:20070053.

PMID:
19045834
[PubMed - indexed for MEDLINE]
8.

Computational modeling of post-transcriptional gene regulation by microRNAs.

Khanin R, Vinciotti V.

J Comput Biol. 2008 Apr;15(3):305-16. doi: 10.1089/cmb.2007.0184.

PMID:
18333757
[PubMed - indexed for MEDLINE]
9.

Statistical reconstruction of transcription factor activity using Michaelis-Menten kinetics.

Khanin R, Vinciotti V, Mersinias V, Smith CP, Wit E.

Biometrics. 2007 Sep;63(3):816-23.

PMID:
17825013
[PubMed - indexed for MEDLINE]
10.

Structure and function in glaucoma: The relationship between a functional visual field map and an anatomic retinal map.

Strouthidis NG, Vinciotti V, Tucker AJ, Gardiner SK, Crabb DP, Garway-Heath DF.

Invest Ophthalmol Vis Sci. 2006 Dec;47(12):5356-62.

PMID:
17122124
[PubMed - indexed for MEDLINE]
Free Article
11.

Reconstructing repressor protein levels from expression of gene targets in Escherichia coli.

Khanin R, Vinciotti V, Wit E.

Proc Natl Acad Sci U S A. 2006 Dec 5;103(49):18592-6. Epub 2006 Nov 22.

PMID:
17121995
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Exploiting the full power of temporal gene expression profiling through a new statistical test: application to the analysis of muscular dystrophy data.

Vinciotti V, Liu X, Turk R, de Meijer EJ, 't Hoen PA.

BMC Bioinformatics. 2006 Apr 3;7:183.

PMID:
16584545
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Robust Selection of Predictive Genes via a Simple Classifier.

Vinciotti V, Tucker A, Kellam P, Liu X.

Appl Bioinformatics. 2006;5(1):1-11.

PMID:
16539532
[PubMed - indexed for MEDLINE]
14.

A spatio-temporal Bayesian network classifier for understanding visual field deterioration.

Tucker A, Vinciotti V, Liu X, Garway-Heath D.

Artif Intell Med. 2005 Jun;34(2):163-77.

PMID:
15894180
[PubMed - indexed for MEDLINE]
15.

Consensus clustering and functional interpretation of gene-expression data.

Swift S, Tucker A, Vinciotti V, Martin N, Orengo C, Liu X, Kellam P.

Genome Biol. 2004;5(11):R94. Epub 2004 Nov 1.

PMID:
15535870
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

An experimental evaluation of a loop versus a reference design for two-channel microarrays.

Vinciotti V, Khanin R, D'Alimonte D, Liu X, Cattini N, Hotchkiss G, Bucca G, de Jesus O, Rasaiyaah J, Smith CP, Kellam P, Wit E.

Bioinformatics. 2005 Feb 15;21(4):492-501. Epub 2004 Sep 16.

PMID:
15374872
[PubMed - indexed for MEDLINE]
Free Article

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