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Items: 11

1.

Semi-Supervised Affinity Propagation with Soft Instance-Level Constraints.

Arzeno NM, Vikalo H.

IEEE Trans Pattern Anal Mach Intell. 2015 May;37(5):1041-52. doi: 10.1109/TPAMI.2014.2359454.

PMID:
26353327
2.

Joint haplotype assembly and genotype calling via sequential Monte Carlo algorithm.

Ahn S, Vikalo H.

BMC Bioinformatics. 2015 Jul 16;16:223. doi: 10.1186/s12859-015-0651-8.

3.

Designing optimal mortality risk prediction scores that preserve clinical knowledge.

Arzeno NM, Lawson KA, Duzinski SV, Vikalo H.

J Biomed Inform. 2015 Aug;56:145-56. doi: 10.1016/j.jbi.2015.05.021. Epub 2015 Jun 6.

PMID:
26056073
4.

SDhaP: haplotype assembly for diploids and polyploids via semi-definite programming.

Das S, Vikalo H.

BMC Genomics. 2015 Apr 3;16:260. doi: 10.1186/s12864-015-1408-5.

5.

Bayesian active learning for drug combinations.

Park M, Nassar M, Vikalo H.

IEEE Trans Biomed Eng. 2013 Nov;60(11):3248-55. doi: 10.1109/TBME.2013.2272322. Epub 2013 Jul 4.

PMID:
23846437
6.

Base calling for high-throughput short-read sequencing: dynamic programming solutions.

Das S, Vikalo H.

BMC Bioinformatics. 2013 Apr 15;14:129. doi: 10.1186/1471-2105-14-129.

7.

ParticleCall: a particle filter for base calling in next-generation sequencing systems.

Shen X, Vikalo H.

BMC Bioinformatics. 2012 Jul 9;13:160. doi: 10.1186/1471-2105-13-160.

8.

OnlineCall: fast online parameter estimation and base calling for illumina's next-generation sequencing.

Das S, Vikalo H.

Bioinformatics. 2012 Jul 1;28(13):1677-83. doi: 10.1093/bioinformatics/bts256. Epub 2012 May 7.

9.

A dual Kalman filter for parameter-state estimation in real-time DNA microarrays.

Shamaiah M, Vikalo H.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:7614-7. doi: 10.1109/IEMBS.2011.6091876.

PMID:
22256101
10.

FRET-based real-time DNA microarrays.

Hassibi A, Vikalo H, Riechmann JL, Hassibi B.

Methods Mol Biol. 2012;815:147-59. doi: 10.1007/978-1-61779-424-7_12.

PMID:
22130990
11.

Real-time DNA microarray analysis.

Hassibi A, Vikalo H, Riechmann JL, Hassibi B.

Nucleic Acids Res. 2009 Nov;37(20):e132. doi: 10.1093/nar/gkp675. Epub 2009 Aug 31.

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