Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 39

1.

Evaluating a variety of text-mined features for automatic protein function prediction with GOstruct.

Funk CS, Kahanda I, Ben-Hur A, Verspoor KM.

J Biomed Semantics. 2015 Mar 18;6:9. doi: 10.1186/s13326-015-0006-4. eCollection 2015.

2.

The CHEMDNER corpus of chemicals and drugs and its annotation principles.

Krallinger M, Rabal O, Leitner F, Vazquez M, Salgado D, Lu Z, Leaman R, Lu Y, Ji D, Lowe DM, Sayle RA, Batista-Navarro RT, Rak R, Huber T, Rocktäschel T, Matos S, Campos D, Tang B, Xu H, Munkhdalai T, Ryu KH, Ramanan SV, Nathan S, Žitnik S, Bajec M, Weber L, Irmer M, Akhondi SA, Kors JA, Xu S, An X, Sikdar UK, Ekbal A, Yoshioka M, Dieb TM, Choi M, Verspoor K, Khabsa M, Giles CL, Liu H, Ravikumar KE, Lamurias A, Couto FM, Dai HJ, Tsai RT, Ata C, Can T, Usié A, Alves R, Segura-Bedmar I, Martínez P, Oyarzabal J, Valencia A.

J Cheminform. 2015 Jan 19;7(Suppl 1 Text mining for chemistry and the CHEMDNER track):S2. doi: 10.1186/1758-2946-7-S1-S2. eCollection 2015.

3.

Assessing the impact of case sensitivity and term information gain on biomedical concept recognition.

Groza T, Verspoor K.

PLoS One. 2015 Mar 19;10(3):e0119091. doi: 10.1371/journal.pone.0119091. eCollection 2015.

4.

Associating disease-related genetic variants in intergenic regions to the genes they impact.

Macintyre G, Jimeno Yepes A, Ong CS, Verspoor K.

PeerJ. 2014 Oct 23;2:e639. doi: 10.7717/peerj.639. eCollection 2014.

5.

Mutation extraction tools can be combined for robust recognition of genetic variants in the literature.

Jimeno Yepes A, Verspoor K.

Version 2. F1000Res. 2014 Jan 21 [revised 2014 Jun 10];3:18. doi: 10.12688/f1000research.3-18.v2. eCollection 2014.

6.

Big data in medicine is driving big changes.

Martin-Sanchez F, Verspoor K.

Yearb Med Inform. 2014 Aug 15;9:14-20. doi: 10.15265/IY-2014-0020.

7.

Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013.

Verspoor K, Shatkay H, Hirschman L, Blaschke C, Valencia A.

Bioinformatics. 2015 Jan 15;31(2):297-8. doi: 10.1093/bioinformatics/btu412. Epub 2014 Jul 14.

PMID:
25024289
8.

Mapping biomedical vocabularies: a semi-automated term matching approach.

Ofoghi B, Lopez-Campos GH, Martin Sanchez FJ, Verspoor K.

Stud Health Technol Inform. 2014;202:16-9.

PMID:
25000004
9.

BioC interoperability track overview.

Comeau DC, Batista-Navarro RT, Dai HJ, Doğan RI, Yepes AJ, Khare R, Lu Z, Marques H, Mattingly CJ, Neves M, Peng Y, Rak R, Rinaldi F, Tsai RT, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ.

Database (Oxford). 2014 Jun 30;2014. pii: bau053. doi: 10.1093/database/bau053. Print 2014. Review.

10.

Roles for text mining in protein function prediction.

Verspoor KM.

Methods Mol Biol. 2014;1159:95-108. doi: 10.1007/978-1-4939-0709-0_6. Review.

PMID:
24788263
11.

Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters.

Funk C, Baumgartner W Jr, Garcia B, Roeder C, Bada M, Cohen KB, Hunter LE, Verspoor K.

BMC Bioinformatics. 2014 Feb 26;15:59. doi: 10.1186/1471-2105-15-59.

12.

Literature mining of genetic variants for curation: quantifying the importance of supplementary material.

Jimeno Yepes A, Verspoor K.

Database (Oxford). 2014 Feb 10;2014:bau003. doi: 10.1093/database/bau003. Print 2014.

13.

Representing annotation compositionality and provenance for the Semantic Web.

Livingston KM, Bada M, Hunter LE, Verspoor K.

J Biomed Semantics. 2013 Nov 22;4:38. doi: 10.1186/2041-1480-4-38. eCollection 2013.

14.

BioC: a minimalist approach to interoperability for biomedical text processing.

Comeau DC, Islamaj Doğan R, Ciccarese P, Cohen KB, Krallinger M, Leitner F, Lu Z, Peng Y, Rinaldi F, Torii M, Valencia A, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ.

Database (Oxford). 2013 Sep 18;2013:bat064. doi: 10.1093/database/bat064. Print 2013.

15.

Approximate subgraph matching-based literature mining for biomedical events and relations.

Liu H, Hunter L, Kešelj V, Verspoor K.

PLoS One. 2013 Apr 17;8(4):e60954. doi: 10.1371/journal.pone.0060954. Print 2013.

16.

Annotating the biomedical literature for the human variome.

Verspoor K, Jimeno Yepes A, Cavedon L, McIntosh T, Herten-Crabb A, Thomas Z, Plazzer JP.

Database (Oxford). 2013 Apr 12;2013:bat019. doi: 10.1093/database/bat019. Print 2013.

17.

Combining heterogeneous data sources for accurate functional annotation of proteins.

Sokolov A, Funk C, Graim K, Verspoor K, Ben-Hur A.

BMC Bioinformatics. 2013;14 Suppl 3:S10. doi: 10.1186/1471-2105-14-S3-S10. Epub 2013 Feb 28.

18.

Detection of protein catalytic sites in the biomedical literature.

Verspoor K, Mackinlay A, Cohn JD, Wall ME.

Pac Symp Biocomput. 2013:433-44.

19.

A large-scale evaluation of computational protein function prediction.

Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I.

Nat Methods. 2013 Mar;10(3):221-7. doi: 10.1038/nmeth.2340. Epub 2013 Jan 27.

20.

Acquisition and evaluation of verb subcategorization resources for biomedicine.

Rimell L, Lippincott T, Verspoor K, Johnson HL, Korhonen A.

J Biomed Inform. 2013 Apr;46(2):228-37. doi: 10.1016/j.jbi.2013.01.001. Epub 2013 Jan 22.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk