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Results: 1 to 20 of 54

1.

Corallopyronin A specifically targets and depletes essential obligate Wolbachia endobacteria from filarial nematodes in vivo.

Schiefer A, Schmitz A, Schäberle TF, Specht S, Lämmer C, Johnston KL, Vassylyev DG, König GM, Hoerauf A, Pfarr K.

J Infect Dis. 2012 Jul 15;206(2):249-57. doi: 10.1093/infdis/jis341. Epub 2012 May 14.

PMID:
22586066
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The binding site and mechanism of the RNA polymerase inhibitor tagetitoxin: an issue open to debate.

Klyuyev S, Vassylyev DG.

Transcription. 2012 Mar-Apr;3(2):46-50. doi: 10.4161/trns.19468. Epub 2012 Mar 1.

PMID:
22414754
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Structure and function of a membrane component SecDF that enhances protein export.

Tsukazaki T, Mori H, Echizen Y, Ishitani R, Fukai S, Tanaka T, Perederina A, Vassylyev DG, Kohno T, Maturana AD, Ito K, Nureki O.

Nature. 2011 May 11;474(7350):235-8. doi: 10.1038/nature09980.

PMID:
21562494
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The NusA N-terminal domain is necessary and sufficient for enhancement of transcriptional pausing via interaction with the RNA exit channel of RNA polymerase.

Ha KS, Toulokhonov I, Vassylyev DG, Landick R.

J Mol Biol. 2010 Sep 3;401(5):708-25. doi: 10.1016/j.jmb.2010.06.036. Epub 2010 Jun 25.

PMID:
20600118
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II.

Kulaeva OI, Gaykalova DA, Pestov NA, Golovastov VV, Vassylyev DG, Artsimovitch I, Studitsky VM.

Nat Struct Mol Biol. 2009 Dec;16(12):1272-8. doi: 10.1038/nsmb.1689. Epub 2009 Nov 22.

PMID:
19935686
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Elongation by RNA polymerase: a race through roadblocks.

Vassylyev DG.

Curr Opin Struct Biol. 2009 Dec;19(6):691-700. doi: 10.1016/j.sbi.2009.10.004. Epub 2009 Nov 4. Review.

PMID:
19896365
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Crystal structure of albaflavenone monooxygenase containing a moonlighting terpene synthase active site.

Zhao B, Lei L, Vassylyev DG, Lin X, Cane DE, Kelly SL, Yuan H, Lamb DC, Waterman MR.

J Biol Chem. 2009 Dec 25;284(52):36711-9. doi: 10.1074/jbc.M109.064683. Epub 2009 Oct 26.

PMID:
19858213
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Structural insights into mechanisms of the small RNA methyltransferase HEN1.

Huang Y, Ji L, Huang Q, Vassylyev DG, Chen X, Ma JB.

Nature. 2009 Oct 8;461(7265):823-7. doi: 10.1038/nature08433.

PMID:
19812675
[PubMed - indexed for MEDLINE]
9.

Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA.

Sydow JF, Brueckner F, Cheung AC, Damsma GE, Dengl S, Lehmann E, Vassylyev D, Cramer P.

Mol Cell. 2009 Jun 26;34(6):710-21. doi: 10.1016/j.molcel.2009.06.002.

PMID:
19560423
[PubMed - indexed for MEDLINE]
Free Article
10.

Transcription inactivation through local refolding of the RNA polymerase structure.

Belogurov GA, Vassylyeva MN, Sevostyanova A, Appleman JR, Xiang AX, Lira R, Webber SE, Klyuyev S, Nudler E, Artsimovitch I, Vassylyev DG.

Nature. 2009 Jan 15;457(7227):332-5. doi: 10.1038/nature07510. Epub 2008 Oct 22.

PMID:
18946472
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Conformational transition of Sec machinery inferred from bacterial SecYE structures.

Tsukazaki T, Mori H, Fukai S, Ishitani R, Mori T, Dohmae N, Perederina A, Sugita Y, Vassylyev DG, Ito K, Nureki O.

Nature. 2008 Oct 16;455(7215):988-91. doi: 10.1038/nature07421.

PMID:
18923527
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

X-ray structure of the complex of regulatory subunits of human DNA polymerase delta.

Baranovskiy AG, Babayeva ND, Liston VG, Rogozin IB, Koonin EV, Pavlov YI, Vassylyev DG, Tahirov TH.

Cell Cycle. 2008 Oct;7(19):3026-36. Epub 2008 Oct 4.

PMID:
18818516
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Still looking for the magic spot: the crystallographically defined binding site for ppGpp on RNA polymerase is unlikely to be responsible for rRNA transcription regulation.

Vrentas CE, Gaal T, Berkmen MB, Rutherford ST, Haugen SP, Vassylyev DG, Ross W, Gourse RL.

J Mol Biol. 2008 Mar 21;377(2):551-64. doi: 10.1016/j.jmb.2008.01.042. Epub 2008 Jan 26. Erratum in: J Mol Biol. 2008 Jun 20;379(5):1130.

PMID:
18272182
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The elongation factor RfaH and the initiation factor sigma bind to the same site on the transcription elongation complex.

Sevostyanova A, Svetlov V, Vassylyev DG, Artsimovitch I.

Proc Natl Acad Sci U S A. 2008 Jan 22;105(3):865-70. doi: 10.1073/pnas.0708432105. Epub 2008 Jan 14.

PMID:
18195372
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Merging the RNA and DNA worlds.

Artsimovitch I, Vassylyev DG.

Nat Struct Mol Biol. 2007 Dec;14(12):1122-3. No abstract available.

PMID:
18059450
[PubMed - indexed for MEDLINE]
16.

The carboxy-terminal coiled-coil of the RNA polymerase beta'-subunit is the main binding site for Gre factors.

Vassylyeva MN, Svetlov V, Dearborn AD, Klyuyev S, Artsimovitch I, Vassylyev DG.

EMBO Rep. 2007 Nov;8(11):1038-43. Epub 2007 Oct 5.

PMID:
17917675
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Allosteric control of the RNA polymerase by the elongation factor RfaH.

Svetlov V, Belogurov GA, Shabrova E, Vassylyev DG, Artsimovitch I.

Nucleic Acids Res. 2007;35(17):5694-705. Epub 2007 Aug 21.

PMID:
17711918
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Structural basis for substrate loading in bacterial RNA polymerase.

Vassylyev DG, Vassylyeva MN, Zhang J, Palangat M, Artsimovitch I, Landick R.

Nature. 2007 Jul 12;448(7150):163-8. Epub 2007 Jun 20.

PMID:
17581591
[PubMed - indexed for MEDLINE]
19.

Structural basis for transcription elongation by bacterial RNA polymerase.

Vassylyev DG, Vassylyeva MN, Perederina A, Tahirov TH, Artsimovitch I.

Nature. 2007 Jul 12;448(7150):157-62. Epub 2007 Jun 20.

PMID:
17581590
[PubMed - indexed for MEDLINE]
20.

The transition to an elongation complex by T7 RNA polymerase is a multistep process.

Bandwar RP, Ma N, Emanuel SA, Anikin M, Vassylyev DG, Patel SS, McAllister WT.

J Biol Chem. 2007 Aug 3;282(31):22879-86. Epub 2007 Jun 4.

PMID:
17548349
[PubMed - indexed for MEDLINE]
Free PMC Article

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