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Identification of quantitative trait loci for yield and yield related traits in groundnut (Arachis hypogaea L.) under different water regimes in Niger and Senegal.

Faye I, Pandey MK, Hamidou F, Rathore A, Ndoye O, Vadez V, Varshney RK.

Euphytica. 2015;206(3):631-647. Epub 2015 May 30.


Molecular breeding for introgression of fatty acid desaturase mutant alleles (ahFAD2A and ahFAD2B) enhances oil quality in high and low oil containing peanut genotypes.

Janila P, Pandey MK, Shasidhar Y, Variath MT, Sriswathi M, Khera P, Manohar SS, Nagesh P, Vishwakarma MK, Mishra GP, Radhakrishnan T, Manivannan N, Dobariya KL, Vasanthi RP, Varshney RK.

Plant Sci. 2016 Jan;242:203-13. doi: 10.1016/j.plantsci.2015.08.013. Epub 2015 Aug 28.


Exciting journey of 10 years from genomes to fields and markets: Some success stories of genomics-assisted breeding in chickpea, pigeonpea and groundnut.

Varshney RK.

Plant Sci. 2016 Jan;242:98-107. doi: 10.1016/j.plantsci.2015.09.009. Epub 2015 Sep 10. Review.


Genomics for greater efficiency in pigeonpea hybrid breeding.

Saxena RK, Saxena KB, Pazhamala LT, Patel K, Parupalli S, Sameerkumar CV, Varshney RK.

Front Plant Sci. 2015 Oct 1;6:793. doi: 10.3389/fpls.2015.00793. eCollection 2015. Review.


Prioritization of candidate genes in "QTL-hotspot" region for drought tolerance in chickpea (Cicer arietinum L.).

Kale SM, Jaganathan D, Ruperao P, Chen C, Punna R, Kudapa H, Thudi M, Roorkiwal M, Katta MA, Doddamani D, Garg V, Kishor PB, Gaur PM, Nguyen HT, Batley J, Edwards D, Sutton T, Varshney RK.

Sci Rep. 2015 Oct 19;5:15296. doi: 10.1038/srep15296.


NGS-QCbox and Raspberry for Parallel, Automated and Rapid Quality Control Analysis of Large-Scale Next Generation Sequencing (Illumina) Data.

Katta MA, Khan AW, Doddamani D, Thudi M, Varshney RK.

PLoS One. 2015 Oct 13;10(10):e0139868. doi: 10.1371/journal.pone.0139868. eCollection 2015.


Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.

Yang K, Tian Z, Chen C, Luo L, Zhao B, Wang Z, Yu L, Li Y, Sun Y, Li W, Chen Y, Li Y, Zhang Y, Ai D, Zhao J, Shang C, Ma Y, Wu B, Wang M, Gao L, Sun D, Zhang P, Guo F, Wang W, Li Y, Wang J, Varshney RK, Wang J, Ling HQ, Wan P.

Proc Natl Acad Sci U S A. 2015 Oct 27;112(43):13213-8. doi: 10.1073/pnas.1420949112. Epub 2015 Oct 12.


Next-generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea (Cajanus cajan).

Singh VK, Khan AW, Saxena RK, Kumar V, Kale SM, Sinha P, Chitikineni A, Pazhamala LT, Garg V, Sharma M, Sameer Kumar CV, Parupalli S, Vechalapu S, Patil S, Muniswamy S, Ghanta A, Yamini KN, Dharmaraj PS, Varshney RK.

Plant Biotechnol J. 2015 Sep 23. doi: 10.1111/pbi.12470. [Epub ahead of print]


Erratum to: Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs.

Jenko J, Gorjanc G, Cleveland MA, Varshney RK, Whitelaw CB, Woolliams JA, Hickey JM.

Genet Sel Evol. 2015 Sep 11;47:69. doi: 10.1186/s12711-015-0144-2. No abstract available.


Global agricultural intensification during climate change: a role for genomics.

Abberton M, Batley J, Bentley A, Bryant J, Cai H, Cockram J, Costa de Oliveira A, Cseke LJ, Dempewolf H, De Pace C, Edwards D, Gepts P, Greenland A, Hall AE, Henry R, Hori K, Howe GT, Hughes S, Humphreys M, Lightfoot D, Marshall A, Mayes S, Nguyen HT, Ogbonnaya FC, Ortiz R, Paterson AH, Tuberosa R, Valliyodan B, Varshney RK, Yano M.

Plant Biotechnol J. 2015 Sep 11. doi: 10.1111/pbi.12467. [Epub ahead of print]


Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects.

Kole C, Muthamilarasan M, Henry R, Edwards D, Sharma R, Abberton M, Batley J, Bentley A, Blakeney M, Bryant J, Cai H, Cakir M, Cseke LJ, Cockram J, de Oliveira AC, De Pace C, Dempewolf H, Ellison S, Gepts P, Greenland A, Hall A, Hori K, Hughes S, Humphreys MW, Iorizzo M, Ismail AM, Marshall A, Mayes S, Nguyen HT, Ogbonnaya FC, Ortiz R, Paterson AH, Simon PW, Tohme J, Tuberosa R, Valliyodan B, Varshney RK, Wullschleger SD, Yano M, Prasad M.

Front Plant Sci. 2015 Aug 11;6:563. doi: 10.3389/fpls.2015.00563. eCollection 2015. Review.


CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea.

Doddamani D, Khan AW, Katta MA, Agarwal G, Thudi M, Ruperao P, Edwards D, Varshney RK.

Database (Oxford). 2015 Aug 19;2015. pii: bav078. doi: 10.1093/database/bav078. Print 2015.


Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers.

Wang H, Khera P, Huang B, Yuan M, Katam R, Zhuang W, Harris-Shultz K, Moore KM, Culbreath AK, Zhang X, Varshney RK, Xie L, Guo B.

J Integr Plant Biol. 2015 Jul 15. doi: 10.1111/jipb.12380. [Epub ahead of print]


Marker-trait association study for protein content in chickpea (Cicer arietinum L.).

Jadhav AA, Rayate SJ, Mhase LB, Thudi M, Chitikineni A, Harer PN, Jadhav AS, Varshney RK, Kulwal PL.

J Genet. 2015 Jun;94(2):279-86.


Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs.

Jenko J, Gorjanc G, Cleveland MA, Varshney RK, Whitelaw CB, Woolliams JA, Hickey JM.

Genet Sel Evol. 2015 Jul 2;47:55. doi: 10.1186/s12711-015-0135-3. Erratum in: Genet Sel Evol. 2015;47:69.


Identification of low Ca2+ stress-induced embryo apoptosis response genes in Arachis hypogaea by SSH-associated library lift (SSHaLL).

Chen H, Zhang C, Cai TC, Deng Y, Zhou S, Zheng Y, Ma S, Tang R, Varshney RK, Zhuang W.

Plant Biotechnol J. 2015 Jun 16. doi: 10.1111/pbi.12415. [Epub ahead of print]


Proline over-accumulation alleviates salt stress and protects photosynthetic and antioxidant enzyme activities in transgenic sorghum [Sorghum bicolor (L.) Moench].

Surender Reddy P, Jogeswar G, Rasineni GK, Maheswari M, Reddy AR, Varshney RK, Kavi Kishor PB.

Plant Physiol Biochem. 2015 Sep;94:104-13. doi: 10.1016/j.plaphy.2015.05.014. Epub 2015 May 30.


Two key genomic regions harbour QTLs for salinity tolerance in ICCV 2 × JG 11 derived chickpea (Cicer arietinum L.) recombinant inbred lines.

Pushpavalli R, Krishnamurthy L, Thudi M, Gaur PM, Rao MV, Siddique KH, Colmer TD, Turner NC, Varshney RK, Vadez V.

BMC Plant Biol. 2015 May 22;15:124. doi: 10.1186/s12870-015-0491-8.


Plastic fiber design for THz generation through wavelength translation.

Barh A, Varshney RK, Agrawal GP, Rahman BM, Pal BP.

Opt Lett. 2015 May 1;40(9):2107-10. doi: 10.1364/OL.40.002107.


High throughput sequencing of small RNA component of leaves and inflorescence revealed conserved and novel miRNAs as well as phasiRNA loci in chickpea.

Srivastava S, Zheng Y, Kudapa H, Jagadeeswaran G, Hivrale V, Varshney RK, Sunkar R.

Plant Sci. 2015 Jun;235:46-57. doi: 10.1016/j.plantsci.2015.03.002. Epub 2015 Mar 9.

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