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Results: 10

1.

Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems.

Raue A, Steiert B, Schelker M, Kreutz C, Maiwald T, Hass H, Vanlier J, Tönsing C, Adlung L, Engesser R, Mader W, Heinemann T, Hasenauer J, Schilling M, Höfer T, Klipp E, Theis F, Klingmüller U, Schöberl B, Timmer J.

Bioinformatics. 2015 Jul 3. pii: btv405. [Epub ahead of print]

PMID:
26142188
2.

Optimal experiment design for model selection in biochemical networks.

Vanlier J, Tiemann CA, Hilbers PA, van Riel NA.

BMC Syst Biol. 2014 Feb 20;8:20. doi: 10.1186/1752-0509-8-20.

3.

Parameter trajectory analysis to identify treatment effects of pharmacological interventions.

Tiemann CA, Vanlier J, Oosterveer MH, Groen AK, Hilbers PA, van Riel NA.

PLoS Comput Biol. 2013;9(8):e1003166. doi: 10.1371/journal.pcbi.1003166. Epub 2013 Aug 1.

4.

Applications of analysis of dynamic adaptations in parameter trajectories.

van Riel NA, Tiemann CA, Vanlier J, Hilbers PA.

Interface Focus. 2013 Apr 6;3(2):20120084. doi: 10.1098/rsfs.2012.0084.

5.

Parameter uncertainty in biochemical models described by ordinary differential equations.

Vanlier J, Tiemann CA, Hilbers PA, van Riel NA.

Math Biosci. 2013 Dec;246(2):305-14. doi: 10.1016/j.mbs.2013.03.006. Epub 2013 Mar 25. Review.

6.

A Bayesian approach to targeted experiment design.

Vanlier J, Tiemann CA, Hilbers PA, van Riel NA.

Bioinformatics. 2012 Apr 15;28(8):1136-42. doi: 10.1093/bioinformatics/bts092. Epub 2012 Feb 24.

7.

An integrated strategy for prediction uncertainty analysis.

Vanlier J, Tiemann CA, Hilbers PA, van Riel NA.

Bioinformatics. 2012 Apr 15;28(8):1130-5. doi: 10.1093/bioinformatics/bts088. Epub 2012 Feb 21.

8.

Computational modeling of mitochondrial energy transduction.

Schmitz JP, Vanlier J, van Riel NA, Jeneson JA.

Crit Rev Biomed Eng. 2011;39(5):363-77. Review.

9.

Parameter adaptations during phenotype transitions in progressive diseases.

Tiemann CA, Vanlier J, Hilbers PA, van Riel NA.

BMC Syst Biol. 2011 Oct 26;5:174. doi: 10.1186/1752-0509-5-174.

10.

BISEN: Biochemical Simulation Environment.

Vanlier J, Wu F, Qi F, Vinnakota KC, Han Y, Dash RK, Yang F, Beard DA.

Bioinformatics. 2009 Mar 15;25(6):836-7. doi: 10.1093/bioinformatics/btp069. Epub 2009 Feb 25.

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