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Results: 11

1.

Contacts-based prediction of binding affinity in protein-protein complexes.

Vangone A, Bonvin AM.

Elife. 2015 Jul 20;4. doi: 10.7554/eLife.07454. [Epub ahead of print]

2.

CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts.

Chermak E, Petta A, Serra L, Vangone A, Scarano V, Cavallo L, Oliva R.

Bioinformatics. 2015 May 1;31(9):1481-3. doi: 10.1093/bioinformatics/btu837. Epub 2014 Dec 21.

PMID:
25535242
3.

MDcons: Intermolecular contact maps as a tool to analyze the interface of protein complexes from molecular dynamics trajectories.

Abdel-Azeim S, Chermak E, Vangone A, Oliva R, Cavallo L.

BMC Bioinformatics. 2014;15 Suppl 5:S1. doi: 10.1186/1471-2105-15-S5-S1. Epub 2014 May 6.

4.

Structural basis for the recognition in an idiotype-anti-idiotype antibody complex related to celiac disease.

Vangone A, Abdel-Azeim S, Caputo I, Sblattero D, Di Niro R, Cavallo L, Oliva R.

PLoS One. 2014 Jul 30;9(7):e102839. doi: 10.1371/journal.pone.0102839. eCollection 2014.

5.

A recurrent Gly43Asp substitution in coagulation Factor X rigidifies its catalytic pocket and impairs catalytic activity and intracellular trafficking.

Menegatti M, Vangone A, Palla R, Milano G, Cavallo L, Oliva R, De Cristofaro R, Peyvandi F.

Thromb Res. 2014 Mar;133(3):481-7. doi: 10.1016/j.thromres.2013.12.020. Epub 2013 Dec 21.

PMID:
24393662
6.

Using a consensus approach based on the conservation of inter-residue contacts to rank CAPRI models.

Vangone A, Cavallo L, Oliva R.

Proteins. 2013 Dec;81(12):2210-20. doi: 10.1002/prot.24423. Epub 2013 Oct 17.

PMID:
24115176
7.

Ranking multiple docking solutions based on the conservation of inter-residue contacts.

Oliva R, Vangone A, Cavallo L.

Proteins. 2013 Sep;81(9):1571-84. doi: 10.1002/prot.24314. Epub 2013 Jun 17.

PMID:
23609916
8.

Fragment-based modeling of membrane protein loops: successes, failures, and prospects for the future.

Kelm S, Vangone A, Choi Y, Ebejer JP, Shi J, Deane CM.

Proteins. 2014 Feb;82(2):175-86. doi: 10.1002/prot.24299. Epub 2013 Oct 17.

PMID:
23589399
9.

CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions.

Vangone A, Oliva R, Cavallo L.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S19. doi: 10.1186/1471-2105-13-S4-S19.

10.

COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes.

Vangone A, Spinelli R, Scarano V, Cavallo L, Oliva R.

Bioinformatics. 2011 Oct 15;27(20):2915-6. doi: 10.1093/bioinformatics/btr484. Epub 2011 Aug 27.

11.

[Magnetic fields in physical therapy. Experience in orthopedics and traumatology rehabilitation].

Borg MJ, Marcuccio F, Poerio AM, Vangone A.

Minerva Med. 1996 Oct;87(10):495-7. Italian.

PMID:
8992414
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