Format
Items per page
Sort by

Send to:

Choose Destination

Search results

Items: 14

1.

Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment.

Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, Park S, Heo L, Rie Lee G, Seok C, Qin S, Zhou HX, Ritchie DW, Maigret B, Devignes MD, Ghoorah A, Torchala M, Chaleil RA, Bates PA, Ben-Zeev E, Eisenstein M, Negi SS, Weng Z, Vreven T, Pierce BG, Borrman TM, Yu J, Ochsenbein F, Guerois R, Vangone A, Rodrigues JP, van Zundert G, Nellen M, Xue L, Karaca E, Melquiond AS, Visscher K, Kastritis PL, Bonvin AM, Xu X, Qiu L, Yan C, Li J, Ma Z, Cheng J, Zou X, Shen Y, Peterson LX, Kim HR, Roy A, Han X, Esquivel-Rodriguez J, Kihara D, Yu X, Bruce NJ, Fuller JC, Wade RC, Anishchenko I, Kundrotas PJ, Vakser IA, Imai K, Yamada K, Oda T, Nakamura T, Tomii K, Pallara C, Romero-Durana M, Jiménez-García B, Moal IH, Férnandez-Recio J, Joung JY, Kim JY, Joo K, Lee J, Kozakov D, Vajda S, Mottarella S, Hall DR, Beglov D, Mamonov A, Xia B, Bohnuud T, Del Carpio CA, Ichiishi E, Marze N, Kuroda D, Roy Burman SS, Gray JJ, Chermak E, Cavallo L, Oliva R, Tovchigrechko A, Wodak SJ.

Proteins. 2016 Apr 28. doi: 10.1002/prot.25007. [Epub ahead of print]

PMID:
27122118
2.

Analysis of the interface variability in NMR structure ensembles of protein-protein complexes.

Calvanese L, D'Auria G, Vangone A, Falcigno L, Oliva R.

J Struct Biol. 2016 Jun;194(3):317-24. doi: 10.1016/j.jsb.2016.03.008. Epub 2016 Mar 9.

PMID:
26968364
3.

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.

Vreven T, Moal IH, Vangone A, Pierce BG, Kastritis PL, Torchala M, Chaleil R, Jiménez-García B, Bates PA, Fernandez-Recio J, Bonvin AM, Weng Z.

J Mol Biol. 2015 Sep 25;427(19):3031-41. doi: 10.1016/j.jmb.2015.07.016. Epub 2015 Jul 29.

4.

Contacts-based prediction of binding affinity in protein-protein complexes.

Vangone A, Bonvin AM.

Elife. 2015 Jul 20;4:e07454. doi: 10.7554/eLife.07454.

5.

CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts.

Chermak E, Petta A, Serra L, Vangone A, Scarano V, Cavallo L, Oliva R.

Bioinformatics. 2015 May 1;31(9):1481-3. doi: 10.1093/bioinformatics/btu837. Epub 2014 Dec 21.

6.

MDcons: Intermolecular contact maps as a tool to analyze the interface of protein complexes from molecular dynamics trajectories.

Abdel-Azeim S, Chermak E, Vangone A, Oliva R, Cavallo L.

BMC Bioinformatics. 2014;15 Suppl 5:S1. doi: 10.1186/1471-2105-15-S5-S1. Epub 2014 May 6.

7.

Structural basis for the recognition in an idiotype-anti-idiotype antibody complex related to celiac disease.

Vangone A, Abdel-Azeim S, Caputo I, Sblattero D, Di Niro R, Cavallo L, Oliva R.

PLoS One. 2014 Jul 30;9(7):e102839. doi: 10.1371/journal.pone.0102839. eCollection 2014.

8.

A recurrent Gly43Asp substitution in coagulation Factor X rigidifies its catalytic pocket and impairs catalytic activity and intracellular trafficking.

Menegatti M, Vangone A, Palla R, Milano G, Cavallo L, Oliva R, De Cristofaro R, Peyvandi F.

Thromb Res. 2014 Mar;133(3):481-7. doi: 10.1016/j.thromres.2013.12.020. Epub 2013 Dec 21.

PMID:
24393662
9.

Using a consensus approach based on the conservation of inter-residue contacts to rank CAPRI models.

Vangone A, Cavallo L, Oliva R.

Proteins. 2013 Dec;81(12):2210-20. doi: 10.1002/prot.24423. Epub 2013 Oct 17.

PMID:
24115176
10.

Ranking multiple docking solutions based on the conservation of inter-residue contacts.

Oliva R, Vangone A, Cavallo L.

Proteins. 2013 Sep;81(9):1571-84. doi: 10.1002/prot.24314. Epub 2013 Jun 17.

PMID:
23609916
11.

Fragment-based modeling of membrane protein loops: successes, failures, and prospects for the future.

Kelm S, Vangone A, Choi Y, Ebejer JP, Shi J, Deane CM.

Proteins. 2014 Feb;82(2):175-86. doi: 10.1002/prot.24299. Epub 2013 Oct 17.

PMID:
23589399
12.

CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions.

Vangone A, Oliva R, Cavallo L.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S19. doi: 10.1186/1471-2105-13-S4-S19.

13.

COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes.

Vangone A, Spinelli R, Scarano V, Cavallo L, Oliva R.

Bioinformatics. 2011 Oct 15;27(20):2915-6. doi: 10.1093/bioinformatics/btr484. Epub 2011 Aug 27.

14.

[Magnetic fields in physical therapy. Experience in orthopedics and traumatology rehabilitation].

Borg MJ, Marcuccio F, Poerio AM, Vangone A.

Minerva Med. 1996 Oct;87(10):495-7. Italian.

PMID:
8992414
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk