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The Medicago sativa gene index 1.2: a web-accessible gene expression atlas for investigating expression differences between Medicago sativa subspecies.

O'Rourke JA, Fu F, Bucciarelli B, Yang SS, Samac DA, Lamb JF, Monteros MJ, Graham MA, Gronwald JW, Krom N, Li J, Dai X, Zhao PX, Vance CP.

BMC Genomics. 2015 Jul 7;16:502. doi: 10.1186/s12864-015-1718-7.


Biodegradation of atrazine by three transgenic grasses and alfalfa expressing a modified bacterial atrazine chlorohydrolase gene.

Vail AW, Wang P, Uefuji H, Samac DA, Vance CP, Wackett LP, Sadowsky MJ.

Transgenic Res. 2015 Jun;24(3):475-88. doi: 10.1007/s11248-014-9851-7. Epub 2014 Nov 29.


An RNA-Seq based gene expression atlas of the common bean.

O'Rourke JA, Iniguez LP, Fu F, Bucciarelli B, Miller SS, Jackson SA, McClean PE, Li J, Dai X, Zhao PX, Hernandez G, Vance CP.

BMC Genomics. 2014 Oct 6;15:866. doi: 10.1186/1471-2164-15-866.


Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean.

Bolon YT, Stec AO, Michno JM, Roessler J, Bhaskar PB, Ries L, Dobbels AA, Campbell BW, Young NP, Anderson JE, Grant DM, Orf JH, Naeve SL, Muehlbauer GJ, Vance CP, Stupar RM.

Genetics. 2014 Nov;198(3):967-81. doi: 10.1534/genetics.114.170340. Epub 2014 Sep 10.


Legume genomics: understanding biology through DNA and RNA sequencing.

O'Rourke JA, Bolon YT, Bucciarelli B, Vance CP.

Ann Bot. 2014 Jun;113(7):1107-20. doi: 10.1093/aob/mcu072. Epub 2014 Apr 25. Review.


Interactions between light intensity and phosphorus nutrition affect the phosphate-mining capacity of white lupin (Lupinus albus L.).

Cheng L, Tang X, Vance CP, White PJ, Zhang F, Shen J.

J Exp Bot. 2014 Jul;65(12):2995-3003. doi: 10.1093/jxb/eru135. Epub 2014 Apr 10.


A re-sequencing based assessment of genomic heterogeneity and fast neutron-induced deletions in a common bean cultivar.

O'Rourke JA, Iniguez LP, Bucciarelli B, Roessler J, Schmutz J, McClean PE, Jackson SA, Hernandez G, Graham MA, Stupar RM, Vance CP.

Front Plant Sci. 2013 Jun 25;4:210. doi: 10.3389/fpls.2013.00210. eCollection 2013.


Genomic heterogeneity and structural variation in soybean near isogenic lines.

Stec AO, Bhaskar PB, Bolon YT, Nolan R, Shoemaker RC, Vance CP, Stupar RM.

Front Plant Sci. 2013 Apr 24;4:104. doi: 10.3389/fpls.2013.00104. eCollection 2013.


Regulatory patterns of a large family of defensin-like genes expressed in nodules of Medicago truncatula.

Nallu S, Silverstein KA, Samac DA, Bucciarelli B, Vance CP, VandenBosch KA.

PLoS One. 2013;8(4):e60355. doi: 10.1371/journal.pone.0060355. Epub 2013 Apr 1.


An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants.

O'Rourke JA, Yang SS, Miller SS, Bucciarelli B, Liu J, Rydeen A, Bozsoki Z, Uhde-Stone C, Tu ZJ, Allan D, Gronwald JW, Vance CP.

Plant Physiol. 2013 Feb;161(2):705-24. doi: 10.1104/pp.112.209254. Epub 2012 Nov 29.


Phosphorus focus editorial.

Vance CP, Chiou TJ.

Plant Physiol. 2011 Jul;156(3):987-8. doi: 10.1104/pp.111.900415. No abstract available.


Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems.

Yang SS, Tu ZJ, Cheung F, Xu WW, Lamb JF, Jung HJ, Vance CP, Gronwald JW.

BMC Genomics. 2011 Apr 19;12:199. doi: 10.1186/1471-2164-12-199.


Update on lupin cluster roots. Update on white lupin cluster root acclimation to phosphorus deficiency.

Cheng L, Bucciarelli B, Shen J, Allan D, Vance CP.

Plant Physiol. 2011 Jul;156(3):1025-32. doi: 10.1104/pp.111.175174. Epub 2011 Apr 4. Review. No abstract available.


White lupin cluster root acclimation to phosphorus deficiency and root hair development involve unique glycerophosphodiester phosphodiesterases.

Cheng L, Bucciarelli B, Liu J, Zinn K, Miller S, Patton-Vogt J, Allan D, Shen J, Vance CP.

Plant Physiol. 2011 Jul;156(3):1131-48. doi: 10.1104/pp.111.173724. Epub 2011 Apr 4.


Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean.

Bolon YT, Haun WJ, Xu WW, Grant D, Stacey MG, Nelson RT, Gerhardt DJ, Jeddeloh JA, Stacey G, Muehlbauer GJ, Orf JH, Naeve SL, Stupar RM, Vance CP.

Plant Physiol. 2011 May;156(1):240-53. doi: 10.1104/pp.110.170811. Epub 2011 Feb 14.


Gene expression patterns are correlated with genomic and genic structure in soybean.

Woody JL, Severin AJ, Bolon YT, Joseph B, Diers BW, Farmer AD, Weeks N, Muehlbauer GJ, Nelson RT, Grant D, Specht JE, Graham MA, Cannon SB, May GD, Vance CP, Shoemaker RC.

Genome. 2011 Jan;54(1):10-8. doi: 10.1139/G10-090.


Crucial roles of sucrose and microRNA399 in systemic signaling of P deficiency: a tale of two team players?

Liu J, Vance CP.

Plant Signal Behav. 2010 Dec;5(12):1556-60. Epub 2010 Dec 1. Review.


The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82.

Haun WJ, Hyten DL, Xu WW, Gerhardt DJ, Albert TJ, Richmond T, Jeddeloh JA, Jia G, Springer NM, Vance CP, Stupar RM.

Plant Physiol. 2011 Feb;155(2):645-55. doi: 10.1104/pp.110.166736. Epub 2010 Nov 29.


Quantitative trait loci, epigenetics, sugars, and microRNAs: quaternaries in phosphate acquisition and use.

Vance CP.

Plant Physiol. 2010 Oct;154(2):582-8. doi: 10.1104/pp.110.161067. No abstract available.


RNA-Seq Atlas of Glycine max: a guide to the soybean transcriptome.

Severin AJ, Woody JL, Bolon YT, Joseph B, Diers BW, Farmer AD, Muehlbauer GJ, Nelson RT, Grant D, Specht JE, Graham MA, Cannon SB, May GD, Vance CP, Shoemaker RC.

BMC Plant Biol. 2010 Aug 5;10:160. doi: 10.1186/1471-2229-10-160.

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