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Results: 1 to 20 of 258

1.

Genome dynamics of the human embryonic kidney 293 lineage in response to cell biology manipulations.

Lin YC, Boone M, Meuris L, Lemmens I, Van Roy N, Soete A, Reumers J, Moisse M, Plaisance S, Drmanac R, Chen J, Speleman F, Lambrechts D, Van de Peer Y, Tavernier J, Callewaert N.

Nat Commun. 2014 Sep 3;5:4767. doi: 10.1038/ncomms5767.

PMID:
25182477
[PubMed - in process]
2.

A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp.

Ahmed S, Cock JM, Pessia E, Luthringer R, Cormier A, Robuchon M, Sterck L, Peters AF, Dittami SM, Corre E, Valero M, Aury JM, Roze D, Van de Peer Y, Bothwell J, Marais GA, Coelho SM.

Curr Biol. 2014 Sep 8;24(17):1945-57. doi: 10.1016/j.cub.2014.07.042. Epub 2014 Aug 28.

PMID:
25176635
[PubMed - in process]
3.

Comparative.

Ranade S, Lin YC, Zuccolo A, Van de Peer Y, García-Gil M.

BMC Plant Biol. 2014 Aug 21;14(1):220. [Epub ahead of print]

PMID:
25143005
[PubMed - as supplied by publisher]
Free PMC Article
4.

ASP-G: an ASP-based method for finding attractors in genetic regulatory networks.

Mushthofa M, Torres G, Van de Peer Y, Marchal K, De Cock M.

Bioinformatics. 2014 Jul 15. pii: btu481. [Epub ahead of print]

PMID:
25028722
[PubMed - as supplied by publisher]
5.

Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution.

Vanneste K, Maere S, Van de Peer Y.

Philos Trans R Soc Lond B Biol Sci. 2014 Aug 5;369(1648). pii: 20130353. doi: 10.1098/rstb.2013.0353.

PMID:
24958926
[PubMed - in process]
Free PMC Article
6.

The genome of Eucalyptus grandis.

Myburg AA, Grattapaglia D, Tuskan GA, Hellsten U, Hayes RD, Grimwood J, Jenkins J, Lindquist E, Tice H, Bauer D, Goodstein DM, Dubchak I, Poliakov A, Mizrachi E, Kullan AR, Hussey SG, Pinard D, van der Merwe K, Singh P, van Jaarsveld I, Silva-Junior OB, Togawa RC, Pappas MR, Faria DA, Sansaloni CP, Petroli CD, Yang X, Ranjan P, Tschaplinski TJ, Ye CY, Li T, Sterck L, Vanneste K, Murat F, Soler M, Clemente HS, Saidi N, Cassan-Wang H, Dunand C, Hefer CA, Bornberg-Bauer E, Kersting AR, Vining K, Amarasinghe V, Ranik M, Naithani S, Elser J, Boyd AE, Liston A, Spatafora JW, Dharmwardhana P, Raja R, Sullivan C, Romanel E, Alves-Ferreira M, Külheim C, Foley W, Carocha V, Paiva J, Kudrna D, Brommonschenkel SH, Pasquali G, Byrne M, Rigault P, Tibbits J, Spokevicius A, Jones RC, Steane DA, Vaillancourt RE, Potts BM, Joubert F, Barry K, Pappas GJ, Strauss SH, Jaiswal P, Grima-Pettenati J, Salse J, Van de Peer Y, Rokhsar DS, Schmutz J.

Nature. 2014 Jun 19;510(7505):356-62. doi: 10.1038/nature13308. Epub 2014 Jun 11.

PMID:
24919147
[PubMed - indexed for MEDLINE]
7.

The (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction; a two decades history.

Pajoro A, Biewers S, Dougali E, Valentim FL, Mendes MA, Porri A, Coupland G, Van de Peer Y, van Dijk AD, Colombo L, Davies B, Angenent GC.

J Exp Bot. 2014 Jun 9. pii: eru233. [Epub ahead of print]

PMID:
24913630
[PubMed - as supplied by publisher]
8.

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary.

Vanneste K, Baele G, Maere S, Van de Peer Y.

Genome Res. 2014 Aug;24(8):1334-47. doi: 10.1101/gr.168997.113. Epub 2014 May 16.

PMID:
24835588
[PubMed - in process]
Free PMC Article
9.

Systematic structural characterization of metabolites in Arabidopsis via candidate substrate-product pair networks.

Morreel K, Saeys Y, Dima O, Lu F, Van de Peer Y, Vanholme R, Ralph J, Vanholme B, Boerjan W.

Plant Cell. 2014 Mar;26(3):929-45. doi: 10.1105/tpc.113.122242. Epub 2014 Mar 31.

PMID:
24685999
[PubMed - in process]
10.

Improving the adaptability of simulated evolutionary swarm robots in dynamically changing environments.

Yao Y, Marchal K, Van de Peer Y.

PLoS One. 2014 Mar 5;9(3):e90695. doi: 10.1371/journal.pone.0090695. eCollection 2014.

PMID:
24599485
[PubMed - in process]
Free PMC Article
11.

Exoproteome analysis of Starmerella bombicola results in the discovery of an esterase required for lactonization of sophorolipids.

Ciesielska K, Van Bogaert IN, Chevineau S, Li B, Groeneboer S, Soetaert W, Van de Peer Y, Devreese B.

J Proteomics. 2014 Feb 26;98:159-74. doi: 10.1016/j.jprot.2013.12.026. Epub 2014 Jan 10.

PMID:
24418522
[PubMed - in process]
12.

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes.

GIGA Community of Scientists, Bracken-Grissom H, Collins AG, Collins T, Crandall K, Distel D, Dunn C, Giribet G, Haddock S, Knowlton N, Martindale M, Medina M, Messing C, O'Brien SJ, Paulay G, Putnam N, Ravasi T, Rouse GW, Ryan JF, Schulze A, Wörheide G, Adamska M, Bailly X, Breinholt J, Browne WE, Diaz MC, Evans N, Flot JF, Fogarty N, Johnston M, Kamel B, Kawahara AY, Laberge T, Lavrov D, Michonneau F, Moroz LL, Oakley T, Osborne K, Pomponi SA, Rhodes A, Santos SR, Satoh N, Thacker RW, Van de Peer Y, Voolstra CR, Welch DM, Winston J, Zhou X.

J Hered. 2014 Jan-Feb;105(1):1-18. doi: 10.1093/jhered/est084.

PMID:
24336862
[PubMed - indexed for MEDLINE]
13.

TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes.

Van Bel M, Proost S, Van Neste C, Deforce D, Van de Peer Y, Vandepoele K.

Genome Biol. 2013 Dec 13;14(12):R134. doi: 10.1186/gb-2013-14-12-r134.

PMID:
24330842
[PubMed - in process]
Free PMC Article
14.

Reciprocal responses in the interaction between Arabidopsis and the cell-content-feeding chelicerate herbivore spider mite.

Zhurov V, Navarro M, Bruinsma KA, Arbona V, Santamaria ME, Cazaux M, Wybouw N, Osborne EJ, Ens C, Rioja C, Vermeirssen V, Rubio-Somoza I, Krishna P, Diaz I, Schmid M, Gómez-Cadenas A, Van de Peer Y, Grbic M, Clark RM, Van Leeuwen T, Grbic V.

Plant Physiol. 2014 Jan;164(1):384-99. doi: 10.1104/pp.113.231555. Epub 2013 Nov 27.

PMID:
24285850
[PubMed - in process]
Free PMC Article
15.

The complex intron landscape and massive intron invasion in a picoeukaryote provides insights into intron evolution.

Verhelst B, Van de Peer Y, Rouzé P.

Genome Biol Evol. 2013;5(12):2393-401. doi: 10.1093/gbe/evt189.

PMID:
24273312
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The heterothallic sugarbeet pathogen Cercospora beticola contains exon fragments of both MAT genes that are homogenized by concerted evolution.

Bolton MD, de Jonge R, Inderbitzin P, Liu Z, Birla K, Van de Peer Y, Subbarao KV, Thomma BP, Secor GA.

Fungal Genet Biol. 2014 Jan;62:43-54. doi: 10.1016/j.fgb.2013.10.011. Epub 2013 Nov 8.

PMID:
24216224
[PubMed - indexed for MEDLINE]
17.

The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis.

De Clercq I, Vermeirssen V, Van Aken O, Vandepoele K, Murcha MW, Law SR, Inzé A, Ng S, Ivanova A, Rombaut D, van de Cotte B, Jaspers P, Van de Peer Y, Kangasjärvi J, Whelan J, Van Breusegem F.

Plant Cell. 2013 Sep;25(9):3472-90. doi: 10.1105/tpc.113.117168. Epub 2013 Sep 17.

PMID:
24045019
[PubMed - in process]
Free PMC Article
18.

SILAC-based proteome analysis of Starmerella bombicola sophorolipid production.

Ciesielska K, Li B, Groeneboer S, Van Bogaert I, Lin YC, Soetaert W, Van de Peer Y, Devreese B.

J Proteome Res. 2013 Oct 4;12(10):4376-92. doi: 10.1021/pr400392a. Epub 2013 Sep 11.

PMID:
23964782
[PubMed - indexed for MEDLINE]
19.

Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions.

Zimmer AD, Lang D, Buchta K, Rombauts S, Nishiyama T, Hasebe M, Van de Peer Y, Rensing SA, Reski R.

BMC Genomics. 2013 Jul 23;14:498. doi: 10.1186/1471-2164-14-498.

PMID:
23879659
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

pico-PLAZA, a genome database of microbial photosynthetic eukaryotes.

Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G.

Environ Microbiol. 2013 Aug;15(8):2147-53. doi: 10.1111/1462-2920.12174. Epub 2013 Jul 4.

PMID:
23826978
[PubMed - indexed for MEDLINE]

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