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Items: 1 to 20 of 282

1.

Complete mitochondrial genome of the Verticillium-wilt causing plant pathogen Verticillium nonalfalfae.

Jelen V, de Jonge R, Van de Peer Y, Javornik B, Jakše J.

PLoS One. 2016 Feb 3;11(2):e0148525. doi: 10.1371/journal.pone.0148525. eCollection 2016.

2.

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.

Olsen JL, Rouzé P, Verhelst B, Lin YC, Bayer T, Collen J, Dattolo E, De Paoli E, Dittami S, Maumus F, Michel G, Kersting A, Lauritano C, Lohaus R, Töpel M, Tonon T, Vanneste K, Amirebrahimi M, Brakel J, Boström C, Chovatia M, Grimwood J, Jenkins JW, Jueterbock A, Mraz A, Stam WT, Tice H, Bornberg-Bauer E, Green PJ, Pearson GA, Procaccini G, Duarte CM, Schmutz J, Reusch TB, Van de Peer Y.

Nature. 2016 Jan 27. doi: 10.1038/nature16548. [Epub ahead of print]

PMID:
26814964
3.

CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool.

Tzfadia O, Diels T, De Meyer S, Vandepoele K, Aharoni A, Van de Peer Y.

Front Plant Sci. 2016 Jan 5;6:1194. doi: 10.3389/fpls.2015.01194. eCollection 2015.

4.

The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution.

Zhang GQ, Xu Q, Bian C, Tsai WC, Yeh CM, Liu KW, Yoshida K, Zhang LS, Chang SB, Chen F, Shi Y, Su YY, Zhang YQ, Chen LJ, Yin Y, Lin M, Huang H, Deng H, Wang ZW, Zhu SL, Zhao X, Deng C, Niu SC, Huang J, Wang M, Liu GH, Yang HJ, Xiao XJ, Hsiao YY, Wu WL, Chen YY, Mitsuda N, Ohme-Takagi M, Luo YB, Van de Peer Y, Liu ZJ.

Sci Rep. 2016 Jan 12;6:19029. doi: 10.1038/srep19029.

5.

Gene duplicability of core genes is highly consistent across all angiosperms.

Li Z, Defoort J, Tasdighian S, Maere S, Van de Peer Y, De Smet R.

Plant Cell. 2016 Jan 7. pii: TPC2015-00877-LSB. [Epub ahead of print]

6.

Comparative in silico analysis of SSRs in coding regions of high confidence predicted genes in Norway spruce (Picea abies) and Loblolly pine (Pinus taeda).

Ranade SS, Lin YC, Van de Peer Y, García-Gil MR.

BMC Genet. 2015 Dec 26;16(1):149. doi: 10.1186/s12863-015-0304-y.

7.

Polyploidy and genome evolution in plants.

Soltis PS, Marchant DB, Van de Peer Y, Soltis DE.

Curr Opin Genet Dev. 2015 Dec;35:119-25. doi: 10.1016/j.gde.2015.11.003. Epub 2015 Dec 2. Review.

PMID:
26656231
8.

Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis.

Hakala K, Van Landeghem S, Salakoski T, Van de Peer Y, Ginter F.

BMC Bioinformatics. 2015;16 Suppl 16:S3. doi: 10.1186/1471-2105-16-S16-S3. Epub 2015 Oct 30.

9.

Cell line name recognition in support of the identification of synthetic lethality in cancer from text.

Kaewphan S, Van Landeghem S, Ohta T, Van de Peer Y, Ginter F, Pyysalo S.

Bioinformatics. 2016 Jan 15;32(2):276-82. doi: 10.1093/bioinformatics/btv570. Epub 2015 Oct 1.

10.

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies).

Delhomme N, Sundström G, Zamani N, Lantz H, Lin YC, Hvidsten TR, Höppner MP, Jern P, Van de Peer Y, Lundeberg J, Grabherr MG, Street NR.

PLoS One. 2015 Sep 28;10(9):e0139080. doi: 10.1371/journal.pone.0139080. eCollection 2015.

11.

Exploration of alternative splicing events in ten different grapevine cultivars.

Potenza E, Racchi ML, Sterck L, Coller E, Asquini E, Tosatto SC, Velasco R, Van de Peer Y, Cestaro A.

BMC Genomics. 2015 Sep 17;16:706. doi: 10.1186/s12864-015-1922-5.

12.

Corrigendum: Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts.

Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, Souciet JL, Gabaldón T, Tinsley CR, Casaregola S.

Sci Rep. 2015 Jul 30;5:12596. doi: 10.1038/srep12596. No abstract available.

13.

Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays.

Ghorbani S, Lin YC, Parizot B, Fernandez A, Njo MF, Van de Peer Y, Beeckman T, Hilson P.

J Exp Bot. 2015 Aug;66(17):5257-69. doi: 10.1093/jxb/erv346. Epub 2015 Jul 20.

14.

The Plant Genome Integrative Explorer Resource: PlantGenIE.org.

Sundell D, Mannapperuma C, Netotea S, Delhomme N, Lin YC, Sjödin A, Van de Peer Y, Jansson S, Hvidsten TR, Street NR.

New Phytol. 2015 Dec;208(4):1149-56. doi: 10.1111/nph.13557. Epub 2015 Jul 20.

PMID:
26192091
15.

Comparative phenomics and targeted use of genomics reveals variation in carbon and nitrogen assimilation among different Brettanomyces bruxellensis strains.

Crauwels S, Van Assche A, de Jonge R, Borneman AR, Verreth C, Troels P, De Samblanx G, Marchal K, Van de Peer Y, Willems KA, Verstrepen KJ, Curtin CD, Lievens B.

Appl Microbiol Biotechnol. 2015 Nov;99(21):9123-34. doi: 10.1007/s00253-015-6769-9. Epub 2015 Jul 2.

PMID:
26135985
16.

Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts.

Morel G, Sterck L, Swennen D, Marcet-Houben M, Onesime D, Levasseur A, Jacques N, Mallet S, Couloux A, Labadie K, Amselem J, Beckerich JM, Henrissat B, Van de Peer Y, Wincker P, Souciet JL, Gabaldón T, Tinsley CR, Casaregola S.

Sci Rep. 2015 Jun 25;5:11571. doi: 10.1038/srep11571. Erratum in: Sci Rep. 2015;5:12596.

17.

Horsetails Are Ancient Polyploids: Evidence from Equisetum giganteum.

Vanneste K, Sterck L, Myburg AA, Van de Peer Y, Mizrachi E.

Plant Cell. 2015 Jun;27(6):1567-78. doi: 10.1105/tpc.15.00157. Epub 2015 May 22.

18.

Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber.

Zhang Z, Mao L, Chen H, Bu F, Li G, Sun J, Li S, Sun H, Jiao C, Blakely R, Pan J, Cai R, Luo R, Van de Peer Y, Jacobsen E, Fei Z, Huang S.

Plant Cell. 2015 Jun;27(6):1595-604. doi: 10.1105/tpc.114.135848. Epub 2015 May 22.

PMID:
26002866
19.

Genome-wide analysis reveals diverged patterns of codon bias, gene expression, and rates of sequence evolution in picea gene families.

De La Torre AR, Lin YC, Van de Peer Y, Ingvarsson PK.

Genome Biol Evol. 2015 Mar 5;7(4):1002-15. doi: 10.1093/gbe/evv044.

20.

Corrigendum: The genome sequence of the orchid Phalaenopsis equestris.

Cai J, Liu X, Vanneste K, Proost S, Tsai WC, Liu KW, Chen LJ, He Y, Xu Q, Bian C, Zheng Z, Sun F, Liu W, Hsiao YY, Pan ZJ, Hsu CC, Yang YP, Hsu YC, Chuang YC, Dievart A, Dufayard JF, Xu X, Wang JY, Wang J, Xiao XJ, Zhao XM, Du R, Zhang GQ, Wang M, Su YY, Xie GC, Liu GH, Li LQ, Huang LQ, Luo YB, Chen HH, Van de Peer Y, Liu ZJ.

Nat Genet. 2015 Mar;47(3):304. doi: 10.1038/ng0315-304a. No abstract available.

PMID:
25711871
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