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Diversity and population-genetic properties of copy number variations and multicopy genes in cattle.

Bickhart DM, Xu L, Hutchison JL, Cole JB, Null DJ, Schroeder SG, Song J, Garcia JF, Sonstegard TS, Van Tassell CP, Schnabel RD, Taylor JF, Lewin HA, Liu GE.

DNA Res. 2016 Apr 15. pii: dsw013. [Epub ahead of print]


Increasing the number of single nucleotide polymorphisms used in genomic evaluation of dairy cattle.

Wiggans GR, Cooper TA, VanRaden PM, Van Tassell CP, Bickhart DM, Sonstegard TS.

J Dairy Sci. 2016 Mar 31. pii: S0022-0302(16)30114-X. doi: 10.3168/jds.2015-10456. [Epub ahead of print]


Population-genetic properties of differentiated copy number variations in cattle.

Xu L, Hou Y, Bickhart DM, Zhou Y, Hay el HA, Song J, Sonstegard TS, Van Tassell CP, Liu GE.

Sci Rep. 2016 Mar 23;6:23161. doi: 10.1038/srep23161.


The Relationship between Runs of Homozygosity and Inbreeding in Jersey Cattle under Selection.

Kim ES, Sonstegard TS, Van Tassell CP, Wiggans G, Rothschild MF.

PLoS One. 2015 Jul 8;10(7):e0129967. doi: 10.1371/journal.pone.0129967. eCollection 2015.


Genome-wide scan of gastrointestinal nematode resistance in closed Angus population selected for minimized influence of MHC.

Kim ES, Sonstegard TS, da Silva MV, Gasbarre LC, Van Tassell CP.

PLoS One. 2015 Mar 24;10(3):e0119380. doi: 10.1371/journal.pone.0119380. eCollection 2015.


Effect of reference population size and available ancestor genotypes on imputation of Mexican Holstein genotypes.

García-Ruiz A, Ruiz-Lopez FJ, Wiggans GR, Van Tassell CP, Montaldo HH.

J Dairy Sci. 2015 May;98(5):3478-84. doi: 10.3168/jds.2014-9132. Epub 2015 Mar 12.


Genetic differentiation of Mexican Holstein cattle and its relationship with Canadian and U.S. Holsteins.

García-Ruiz A, Ruiz-López Fde J, Van Tassell CP, Montaldo HH, Huson HJ.

Front Genet. 2015 Feb 9;6:7. doi: 10.3389/fgene.2015.00007. eCollection 2015.


Assessment of autozygosity in Nellore cows (Bos indicus) through high-density SNP genotypes.

Zavarez LB, Utsunomiya YT, Carmo AS, Neves HH, Carvalheiro R, Ferenčaković M, Pérez O'Brien AM, Curik I, Cole JB, Van Tassell CP, da Silva MV, Sonstegard TS, Sölkner J, Garcia JF.

Front Genet. 2015 Jan 29;6:5. doi: 10.3389/fgene.2015.00005. eCollection 2015.


RAPTR-SV: a hybrid method for the detection of structural variants.

Bickhart DM, Hutchison JL, Xu L, Schnabel RD, Taylor JF, Reecy JM, Schroeder S, Van Tassell CP, Sonstegard TS, Liu GE.

Bioinformatics. 2015 Jul 1;31(13):2084-90. doi: 10.1093/bioinformatics/btv086. Epub 2015 Feb 16.


Genome-wide candidate regions for selective sweeps revealed through massive parallel sequencing of DNA across ten turkey populations.

Aslam ML, Bastiaansen JW, Megens HJ, Crooijmans RP, Nasreen F, Blomberg le A, Van Tassell CP, Sonstegard TS, Schroeder SG, Groenen MA, Long JA.

BMC Genet. 2014 Nov 25;15:117. doi: 10.1186/s12863-014-0117-4.


Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins.

Xu L, Cole JB, Bickhart DM, Hou Y, Song J, VanRaden PM, Sonstegard TS, Van Tassell CP, Liu GE.

BMC Genomics. 2014 Aug 15;15:683. doi: 10.1186/1471-2164-15-683.


High density LD-based structural variations analysis in cattle genome.

Salomon-Torres R, Matukumalli LK, Van Tassell CP, Villa-Angulo C, Gonzalez-Vizcarra VM, Villa-Angulo R.

PLoS One. 2014 Jul 22;9(7):e103046. doi: 10.1371/journal.pone.0103046. eCollection 2014.


Genome-wide association study and ancestral origins of the slick-hair coat in tropically adapted cattle.

Huson HJ, Kim ES, Godfrey RW, Olson TA, McClure MC, Chase CC, Rizzi R, O'Brien AM, Van Tassell CP, Garcia JF, Sonstegard TS.

Front Genet. 2014 Apr 29;5:101. doi: 10.3389/fgene.2014.00101. eCollection 2014.


A genome-wide survey reveals a deletion polymorphism associated with resistance to gastrointestinal nematodes in Angus cattle.

Xu L, Hou Y, Bickhart DM, Song J, Van Tassell CP, Sonstegard TS, Liu GE.

Funct Integr Genomics. 2014 Jun;14(2):333-9. doi: 10.1007/s10142-014-0371-6. Epub 2014 Apr 10.


Bovine exome sequence analysis and targeted SNP genotyping of recessive fertility defects BH1, HH2, and HH3 reveal a putative causative mutation in SMC2 for HH3.

McClure MC, Bickhart D, Null D, Vanraden P, Xu L, Wiggans G, Liu G, Schroeder S, Glasscock J, Armstrong J, Cole JB, Van Tassell CP, Sonstegard TS.

PLoS One. 2014 Mar 25;9(3):e92769. doi: 10.1371/journal.pone.0092769. eCollection 2014.


Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle.

Pérez O'Brien AM, Utsunomiya YT, Mészáros G, Bickhart DM, Liu GE, Van Tassell CP, Sonstegard TS, Da Silva MV, Garcia JF, Sölkner J.

Genet Sel Evol. 2014 Mar 4;46:19. doi: 10.1186/1297-9686-46-19.


Accuracy of genomic predictions in Bos indicus (Nellore) cattle.

Neves HH, Carvalheiro R, O'Brien AM, Utsunomiya YT, do Carmo AS, Schenkel FS, Sölkner J, McEwan JC, Van Tassell CP, Cole JB, da Silva MV, Queiroz SA, Sonstegard TS, Garcia JF.

Genet Sel Evol. 2014 Feb 27;46:17. doi: 10.1186/1297-9686-46-17.


Genome-wide mapping of loci explaining variance in scrotal circumference in Nellore cattle.

Utsunomiya YT, Carmo AS, Neves HH, Carvalheiro R, Matos MC, Zavarez LB, Ito PK, Pérez O'Brien AM, Sölkner J, Porto-Neto LR, Schenkel FS, McEwan J, Cole JB, da Silva MV, Van Tassell CP, Sonstegard TS, Garcia JF.

PLoS One. 2014 Feb 18;9(2):e88561. doi: 10.1371/journal.pone.0088561. eCollection 2014.


Genome-wide detection of signatures of selection in Korean Hanwoo cattle.

Porto-Neto LR, Lee SH, Sonstegard TS, Van Tassell CP, Lee HK, Gibson JP, Gondro C.

Anim Genet. 2014 Apr;45(2):180-90. doi: 10.1111/age.12119. Epub 2014 Feb 4.


Accuracy of genotype imputation in Nelore cattle.

Carvalheiro R, Boison SA, Neves HH, Sargolzaei M, Schenkel FS, Utsunomiya YT, O'Brien AM, Sölkner J, McEwan JC, Van Tassell CP, Sonstegard TS, Garcia JF.

Genet Sel Evol. 2014 Oct 10;46:69. doi: 10.1186/s12711-014-0069-1.

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