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Results: 1 to 20 of 65

1.

Building the sugarcane genome for biotechnology and identifying evolutionary trends.

De Setta N, Monteiro-Vitorello CB, Metcalfe CJ, Cruz GM, Del Bem LE, Vicentini R, Nogueira FT, Campos RA, Nunes SL, Turrini PC, Vieira AP, Ochoa Cruz EA, Corrêa TC, Hotta CT, de Mello Varani A, Vautrin S, da Trindade AS, de Mendonça Vilela M, Lembke CG, Sato PM, de Andrade RF, Nishiyama MY Jr, Cardoso-Silva CB, Scortecci KC, Garcia AA, Carneiro MS, Kim C, Paterson AH, Bergès H, D Hont A, de Souza AP, Souza GM, Vincentz M, Kitajima JP, Van Sluys MA.

BMC Genomics. 2014 Jun 30;15(1):540. [Epub ahead of print]

PMID:
24984568
[PubMed - as supplied by publisher]
Free Article
2.

Virus-like attachment sites and plastic CpG islands:landmarks of diversity in plant Del retrotransposons.

Cruz GM, Metcalfe CJ, de Setta N, Cruz EA, Vieira AP, Medina R, Van Sluys MA.

PLoS One. 2014 May 21;9(5):e97099. doi: 10.1371/journal.pone.0097099. eCollection 2014.

PMID:
24849372
[PubMed - in process]
Free PMC Article
3.

SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids.

Garcia AA, Mollinari M, Marconi TG, Serang OR, Silva RR, Vieira ML, Vicentini R, Costa EA, Mancini MC, Garcia MO, Pastina MM, Gazaffi R, Martins ER, Dahmer N, Sforça DA, Silva CB, Bundock P, Henry RJ, Souza GM, van Sluys MA, Landell MG, Carneiro MS, Vincentz MA, Pinto LR, Vencovsky R, Souza AP.

Sci Rep. 2013 Dec 2;3:3399. doi: 10.1038/srep03399.

PMID:
24292365
[PubMed - in process]
Free PMC Article
4.

Complete Genome Sequence of Leifsonia xyli subsp. cynodontis Strain DSM46306, a Gram-Positive Bacterial Pathogen of Grasses.

Monteiro-Vitorello CB, Zerillo MM, Van Sluys MA, Camargo LE, Kitajima JP.

Genome Announc. 2013 Nov 7;1(6). pii: e00915-13. doi: 10.1128/genomeA.00915-13.

PMID:
24201198
[PubMed]
Free PMC Article
5.

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads.

Darrasse A, Carrère S, Barbe V, Boureau T, Arrieta-Ortiz ML, Bonneau S, Briand M, Brin C, Cociancich S, Durand K, Fouteau S, Gagnevin L, Guérin F, Guy E, Indiana A, Koebnik R, Lauber E, Munoz A, Noël LD, Pieretti I, Poussier S, Pruvost O, Robène-Soustrade I, Rott P, Royer M, Serres-Giardi L, Szurek B, van Sluys MA, Verdier V, Vernière C, Arlat M, Manceau C, Jacques MA.

BMC Genomics. 2013 Nov 6;14:761. doi: 10.1186/1471-2164-14-761.

PMID:
24195767
[PubMed - in process]
Free PMC Article
6.

The role of prophage in plant-pathogenic bacteria.

Varani AM, Monteiro-Vitorello CB, Nakaya HI, Van Sluys MA.

Annu Rev Phytopathol. 2013;51:429-51. doi: 10.1146/annurev-phyto-081211-173010. Epub 2013 May 24. Review.

PMID:
23725471
[PubMed - indexed for MEDLINE]
7.

Functional characterization of sugarcane mustang domesticated transposases and comparative diversity in sugarcane, rice, maize and sorghum.

Kajihara D, de Godoy F, Hamaji TA, Blanco SR, Van Sluys MA, Rossi M.

Genet Mol Biol. 2012 Jul;35(3):632-9. doi: 10.1590/S1415-47572012005000038. Epub 2012 Jul 5.

PMID:
23055803
[PubMed]
Free PMC Article
8.

Mutator System Derivatives Isolated from Sugarcane Genome Sequence.

Manetti ME, Rossi M, Cruz GM, Saccaro NL Jr, Nakabashi M, Altebarmakian V, Rodier-Goud M, Domingues D, D'Hont A, Van Sluys MA.

Trop Plant Biol. 2012 Sep;5(3):233-243. Epub 2012 Jul 6.

PMID:
22905278
[PubMed]
Free PMC Article
9.

A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers.

Palhares AC, Rodrigues-Morais TB, Van Sluys MA, Domingues DS, Maccheroni W Jr, Jordão H Jr, Souza AP, Marconi TG, Mollinari M, Gazaffi R, Garcia AA, Vieira ML.

BMC Genet. 2012 Jun 28;13:51. doi: 10.1186/1471-2156-13-51.

PMID:
22742069
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns.

Domingues DS, Cruz GM, Metcalfe CJ, Nogueira FT, Vicentini R, Alves Cde S, Van Sluys MA.

BMC Genomics. 2012 Apr 16;13:137. doi: 10.1186/1471-2164-13-137.

PMID:
22507400
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains.

Varani AM, Monteiro-Vitorello CB, de Almeida LG, Souza RC, Cunha OL, Lima WC, Civerolo E, Van Sluys MA, Vasconcelos AT.

Genet Mol Biol. 2012 Jan;35(1):149-52. Epub 2012 Feb 16.

PMID:
22481888
[PubMed]
Free PMC Article
12.

Diversification of hAT transposase paralogues in the sugarcane genome.

de Jesus EM, Cruz EA, Cruz GM, Van Sluys MA.

Mol Genet Genomics. 2012 Mar;287(3):205-19. doi: 10.1007/s00438-011-0670-8. Epub 2012 Jan 7.

PMID:
22228195
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Bogdanove AJ, Koebnik R, Lu H, Furutani A, Angiuoli SV, Patil PB, Van Sluys MA, Ryan RP, Meyer DF, Han SW, Aparna G, Rajaram M, Delcher AL, Phillippy AM, Puiu D, Schatz MC, Shumway M, Sommer DD, Trapnell C, Benahmed F, Dimitrov G, Madupu R, Radune D, Sullivan S, Jha G, Ishihara H, Lee SW, Pandey A, Sharma V, Sriariyanun M, Szurek B, Vera-Cruz CM, Dorman KS, Ronald PC, Verdier V, Dow JM, Sonti RV, Tsuge S, Brendel VP, Rabinowicz PD, Leach JE, White FF, Salzberg SL.

J Bacteriol. 2011 Oct;193(19):5450-64. doi: 10.1128/JB.05262-11. Epub 2011 Jul 22.

PMID:
21784931
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Pathogenomics of Xanthomonas: understanding bacterium-plant interactions.

Ryan RP, Vorhölter FJ, Potnis N, Jones JB, Van Sluys MA, Bogdanove AJ, Dow JM.

Nat Rev Microbiol. 2011 May;9(5):344-55. doi: 10.1038/nrmicro2558. Epub 2011 Apr 11. Review.

PMID:
21478901
[PubMed - indexed for MEDLINE]
15.

Copia retrotransposon in the Zaprionus genus: another case of transposable element sharing with the Drosophila melanogaster subgroup.

de Setta N, Van Sluys MA, Capy P, Carareto CM.

J Mol Evol. 2011 Mar;72(3):326-38. doi: 10.1007/s00239-011-9435-6. Epub 2011 Feb 24.

PMID:
21347850
[PubMed - indexed for MEDLINE]
16.

High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane.

Garsmeur O, Charron C, Bocs S, Jouffe V, Samain S, Couloux A, Droc G, Zini C, Glaszmann JC, Van Sluys MA, D'Hont A.

New Phytol. 2011 Jan;189(2):629-42. doi: 10.1111/j.1469-8137.2010.03497.x. Epub 2010 Oct 29.

PMID:
21039564
[PubMed - indexed for MEDLINE]
17.

Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes.

Wang J, Roe B, Macmil S, Yu Q, Murray JE, Tang H, Chen C, Najar F, Wiley G, Bowers J, Van Sluys MA, Rokhsar DS, Hudson ME, Moose SP, Paterson AH, Ming R.

BMC Genomics. 2010 Apr 23;11:261. doi: 10.1186/1471-2164-11-261.

PMID:
20416060
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Nitric oxide mediates the hormonal control of Crassulacean acid metabolism expression in young pineapple plants.

Freschi L, Rodrigues MA, Domingues DS, Purgatto E, Van Sluys MA, Magalhaes JR, Kaiser WM, Mercier H.

Plant Physiol. 2010 Apr;152(4):1971-85. doi: 10.1104/pp.109.151613. Epub 2010 Feb 10.

PMID:
20147491
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genomic analysis of wild tomato introgressions determining metabolism- and yield-associated traits.

Kamenetzky L, Asís R, Bassi S, de Godoy F, Bermúdez L, Fernie AR, Van Sluys MA, Vrebalov J, Giovannoni JJ, Rossi M, Carrari F.

Plant Physiol. 2010 Apr;152(4):1772-86. doi: 10.1104/pp.109.150532. Epub 2010 Jan 29.

PMID:
20118271
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila.

de Setta N, Van Sluys MA, Capy P, Carareto CM.

BMC Evol Biol. 2009 Dec 2;9:279. doi: 10.1186/1471-2148-9-279.

PMID:
19954522
[PubMed - indexed for MEDLINE]
Free PMC Article

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