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The Quorum Sensing Inhibitor Hamamelitannin Increases Antibiotic Susceptibility of Staphylococcus aureus Biofilms by Affecting Peptidoglycan Biosynthesis and eDNA Release.

Brackman G, Breyne K, De Rycke R, Vermote A, Van Nieuwerburgh F, Meyer E, Van Calenbergh S, Coenye T.

Sci Rep. 2016 Feb 1;6:20321. doi: 10.1038/srep20321.


Suboptimal culture conditions induce more deviations in gene expression in male than female bovine blastocysts.

Heras S, De Coninck DI, Van Poucke M, Goossens K, Bogado Pascottini O, Van Nieuwerburgh F, Deforce D, De Sutter P, Leroy JL, Gutierrez-Adan A, Peelman L, Van Soom A.

BMC Genomics. 2016 Jan 22;17(1):72. doi: 10.1186/s12864-016-2393-z.


The Equine Embryo Influences Immune Related Gene Expression in the Oviduct.

Smits K, De Coninck DI, Van Nieuwerburgh F, Govaere J, Van Poucke M, Peelman L, Deforce D, Van Soom A.

Biol Reprod. 2016 Jan 6. pii: biolreprod.115.136432. [Epub ahead of print]


In vivo study of Dicer-2-mediated immune response of the small interfering RNA pathway upon systemic infections of virulent and avirulent viruses in Bombus terrestris.

Niu J, Smagghe G, De Coninck DI, Van Nieuwerburgh F, Deforce D, Meeus I.

Insect Biochem Mol Biol. 2015 Dec 19;70:127-137. doi: 10.1016/j.ibmb.2015.12.006. [Epub ahead of print]


Toward the most ideal case-control design with related and unrelated dogs in whole-exome sequencing studies.

Broeckx BJ, Coopman F, Verhoeven GE, De Keulenaer S, De Meester E, Bavegems V, Smets P, Van Ryssen B, Van Nieuwerburgh F, Deforce D.

Anim Genet. 2015 Dec 22. doi: 10.1111/age.12400. [Epub ahead of print]


An heuristic filtering tool to identify phenotype-associated genetic variants applied to human intellectual disability and canine coat colors.

Broeckx BJ, Coopman F, Verhoeven G, Bosmans T, Gielen I, Dingemanse W, Saunders JH, Deforce D, Van Nieuwerburgh F.

BMC Bioinformatics. 2015 Nov 19;16:391. doi: 10.1186/s12859-015-0822-7.


Divergence between the Highly Virulent Zoonotic Pathogen Helicobacter heilmannii and Its Closest Relative, the Low-Virulence "Helicobacter ailurogastricus" sp. nov.

Joosten M, Lindén S, Rossi M, Tay AC, Skoog E, Padra M, Peters F, Perkins T, Vandamme P, Van Nieuwerburgh F, D'Herde K, Van den Broeck W, Flahou B, Deforce D, Ducatelle R, Marshall B, Haesebrouck F, Smet A.

Infect Immun. 2015 Nov 2;84(1):293-306. doi: 10.1128/IAI.01300-15.


Colony contact contributes to the diversity of gut bacteria in bumblebees (Bombus terrestris).

Billiet A, Meeus I, Van Nieuwerburgh F, Deforce D, Wäckers F, Smagghe G.

Insect Sci. 2015 Oct 27. doi: 10.1111/1744-7917.12284. [Epub ahead of print]


Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315.

Sass AM, Van Acker H, Förstner KU, Van Nieuwerburgh F, Deforce D, Vogel J, Coenye T.

BMC Genomics. 2015 Oct 13;16:775. doi: 10.1186/s12864-015-1993-3.


Forensic Loci Allele Database (FLAD): Automatically generated, permanent identifiers for sequenced forensic alleles.

Van Neste C, Van Criekinge W, Deforce D, Van Nieuwerburgh F.

Forensic Sci Int Genet. 2016 Jan;20:e1-3. doi: 10.1016/j.fsigen.2015.09.006. Epub 2015 Sep 21.


Viral Small-RNA Analysis of Bombyx mori Larval Midgut during Persistent and Pathogenic Cytoplasmic Polyhedrosis Virus Infection.

Zografidis A, Van Nieuwerburgh F, Kolliopoulou A, Apostolou-Karampelis K, Head SR, Deforce D, Smagghe G, Swevers L.

J Virol. 2015 Nov;89(22):11473-86. doi: 10.1128/JVI.01695-15. Epub 2015 Sep 2.


Statistical framework for detection of genetically modified organisms based on Next Generation Sequencing.

Willems S, Fraiture MA, Deforce D, De Keersmaecker SC, De Loose M, Ruttink T, Herman P, Van Nieuwerburgh F, Roosens N.

Food Chem. 2016 Feb 1;192:788-98. doi: 10.1016/j.foodchem.2015.07.074. Epub 2015 Jul 21.


Genome Sequence of Devriesea agamarum, Isolated from Agamid Lizards with Dermatitis.

Haesendonck R, Van Nieuwerburgh F, Haesebrouck F, Deforce D, Pasmans F, Martel A.

Genome Announc. 2015 Aug 20;3(4). pii: e00949-15. doi: 10.1128/genomeA.00949-15.


Shallow whole genome sequencing is well suited for the detection of chromosomal aberrations in human blastocysts.

Deleye L, Dheedene A, De Coninck D, Sante T, Christodoulou C, Heindryckx B, Van den Abbeel E, De Sutter P, Deforce D, Menten B, Van Nieuwerburgh F.

Fertil Steril. 2015 Nov;104(5):1276-85.e1. doi: 10.1016/j.fertnstert.2015.07.1144. Epub 2015 Aug 14.


Effect of multiple allelic drop-outs in forensic RMNE calculations.

Van Neste C, Deforce D, Van Nieuwerburgh F.

Forensic Sci Int Genet. 2015 Nov;19:243-9. doi: 10.1016/j.fsigen.2015.08.001. Epub 2015 Aug 6.


Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes.

Broeckx BJ, Hitte C, Coopman F, Verhoeven GE, De Keulenaer S, De Meester E, Derrien T, Alfoldi J, Lindblad-Toh K, Bosmans T, Gielen I, Van Bree H, Van Ryssen B, Saunders JH, Van Nieuwerburgh F, Deforce D.

Sci Rep. 2015 Aug 3;5:12810. doi: 10.1038/srep12810.


Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method.

Deleye L, De Coninck D, Christodoulou C, Sante T, Dheedene A, Heindryckx B, Van den Abbeel E, De Sutter P, Menten B, Deforce D, Van Nieuwerburgh F.

Sci Rep. 2015 Jun 30;5:11711. doi: 10.1038/srep11711.


A doubling of microphytobenthos biomass coincides with a tenfold increase in denitrifier and total bacterial abundances in intertidal sediments of a temperate estuary.

Decleyre H, Heylen K, Sabbe K, Tytgat B, Deforce D, Van Nieuwerburgh F, Van Colen C, Willems A.

PLoS One. 2015 May 11;10(5):e0126583. doi: 10.1371/journal.pone.0126583. eCollection 2015.


16S rRNA Amplicon Sequencing Demonstrates that Indoor-Reared Bumblebees (Bombus terrestris) Harbor a Core Subset of Bacteria Normally Associated with the Wild Host.

Meeus I, Parmentier L, Billiet A, Maebe K, Van Nieuwerburgh F, Deforce D, Wäckers F, Vandamme P, Smagghe G.

PLoS One. 2015 Apr 29;10(4):e0125152. doi: 10.1371/journal.pone.0125152. eCollection 2015.


Transcriptome analysis of Bombyx mori larval midgut during persistent and pathogenic cytoplasmic polyhedrosis virus infection.

Kolliopoulou A, Van Nieuwerburgh F, Stravopodis DJ, Deforce D, Swevers L, Smagghe G.

PLoS One. 2015 Mar 27;10(3):e0121447. doi: 10.1371/journal.pone.0121447. eCollection 2015. Erratum in: PLoS One. 2015;10(4):e0126452.

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